FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ESCF3 (Chaperone protein dnaJ OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOUT (Chaperone protein dnaJ OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOSM (Chaperone protein dnaJ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOSE (Chaperone protein dnaJ OS=Escherichia coli (strain SE11) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOLU (Chaperone protein dnaJ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOLI (Chaperone protein dnaJ OS=Escherichia coli (strain K12) GN=dnaJ PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOLC (Chaperone protein dnaJ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOL6 (Chaperone protein dnaJ OS=Escherichia coli O6 GN=dnaJ PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOHS (Chaperone protein dnaJ OS=Escherichia coli O9:H4 (strain HS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ECODH (Chaperone protein dnaJ OS=Escherichia coli (strain K12 / DH10B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D Y++LGV + A +REI+KA+ +L+++YHPD+N+ +K A+ KF EI  AY++L+D +KR  YD Y    G   F+ G  G  G
Sbjct:    5 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY----GHAAFEQGGMGGGG 83          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ESCF37.482e-1444.58Chaperone protein dnaJ OS=Escherichia fergusonii (... [more]
DNAJ_ECOUT7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECOSM7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECOSE7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECOLU7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli O17:K52... [more]
DNAJ_ECOLI7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECOLC7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECOL67.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli O6 GN=d... [more]
DNAJ_ECOHS7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli O9:H4 (... [more]
DNAJ_ECODH7.482e-1444.58Chaperone protein dnaJ OS=Escherichia coli (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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