FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: CBPA_PSEE4 (Curved DNA-binding protein OS=Pseudomonas entomophila (strain L48) GN=cbpA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYD---LYGDEKGSP----------GFDAGHPGNQGG--YTYFTS--GGPGQSQFTSRPGEWQ 492
            D YK+LGVE +A ++ I+ A+ KL+ +YHPD +K + A++KF E N AY++L D++KR +YD    YG + G P          G + G  G +GG    +F+S  G  G + F    G  Q
Sbjct:    5 DYYKILGVEASADEKAIKAAYRKLARKYHPDVSKERDAEDKFKEANEAYEVLGDKDKRAEYDEIRKYGGQHGRPFQAPPGWQSRGGNGGGGGFEGGDFSDFFSSIFGARGGNPFGGGGGRQQ 126          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: MAS5_YEAST (Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae GN=YDJ1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  184 YKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYG-DEKGSPGFDAGHPGNQGGY------TYFTSGG 450
            Y +LGV   A+  EI+KA+ K +L+YHPDKN ++ A EKF E + AY+ILSD EKR  YD +G D     G   G PG   G+       +F +GG
Sbjct:    8 YDILGVPVTATDVEIKKAYRKCALKYHPDKNPSEEAAEKFKEASAAYEILSDPEKRDIYDQFGEDGLSGAGGAGGFPGGGFGFGDDIFSQFFGAGG 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  175 VDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNK--AAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSR 477
            V+ Y+VLGV+RNAS  +I+KA+ +L+L++HPDKN +    A+ +F E+  AY++LSD +KR  YD YG E  +         N+GG ++F    P Q  FT R
Sbjct:    2 VEYYEVLGVQRNASADDIKKAYRRLALKWHPDKNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYDKYGKEGLT---------NRGGGSHFDE-APFQFGFTFR 94          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBHB (Chaperone protein dnaJ OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 37/84 (44.05%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGG 426
            D Y+VLGV R+AS+R+I+KA+ +L++++HPD+N+ +++A +KF E+  AY+IL+D +K+  YD YG      G   G  G  GG
Sbjct:    5 DFYEVLGVGRDASERDIKKAYKRLAMKFHPDRNQGDESAADKFKEVKEAYEILTDPQKKAAYDQYGHAAFEQGGGFGGGGFGGG 88          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_TRIEI (Chaperone protein dnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAG 405
            D Y++LGV R+A + E+++A+ +L+ +YHPD NK   ++E+F EIN AY+ILSD E + ++D +G+   S G  +G
Sbjct:    4 DYYEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKARFDRFGEAGVSGGAASG 79          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_RHISN (Chaperone protein dnaJ OS=Rhizobium sp. (strain NGR234) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGH---PGNQGGYT 432
            D Y+ LGV++NA ++E++ AF KL+++YHPD+N  ++ A++ F EIN AY+ L D +KR  YD YG    E+G  G   G+    G+ GG++
Sbjct:    4 DLYETLGVKKNADEKELKSAFRKLAMKYHPDRNPGDQEAEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGMGAGFGNGFAGGSAGGFS 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILE (Chaperone protein dnaJ (Fragment) OS=Rhizobium leguminosarum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGG 450
            D Y+ LGV ++A ++E++ AF KL++++HPDKN  +K A+ KF EIN AY++L D +KR  YD Y    G   F+ G  G  GG   F  GG
Sbjct:    5 DFYETLGVAKSADEKELKSAFRKLAMKFHPDKNPDDKDAERKFKEINEAYEMLKDPQKRAAYDRY----GHAAFEHGGMGGGGG--GFAGGG 90          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCMO (Chaperone protein dnaJ OS=Mycoplasma mobile GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQFT 471
            D Y++LG+ ++AS+ EI+KA+  L+  YHPD NK   A+EKF EI  AY+IL+D+ KR++Y+ +G     P  +AG  G Q  +T    G  G S F+
Sbjct:    4 DYYEILGLTKSASKDEIKKAYRTLAKTYHPDVNKETNAEEKFKEITEAYEILNDDVKREQYNQFGHAAFDP--NAGGFGGQNPFTN-AEGFSGFSDFS 98          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_IDILO (Chaperone protein dnaJ OS=Idiomarina loihiensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  172 TVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE------KGSPGFDAGHPGNQG 423
            T D Y+VLGV ++A++R+I+KA+ +++++YHPD+ + +K  + KF EI  AY++LSD +KR+ YD YG E      +G  G  AG  G  G
Sbjct:    3 TQDFYQVLGVSKDANERDIKKAYKRMAMKYHPDRTEGDKDMEIKFKEIKQAYEVLSDPQKRQMYDQYGHEAFEQARQGGAGHGAGGFGGGG 93          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_HYPNA (Chaperone protein dnaJ OS=Hyphomonas neptunium (strain ATCC 15444) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGHP-GNQGG 426
            D Y+VLGVER   ++ ++ A+ KL+++YHPD+N  + AA++KF E+  AY ILSD +KR  YD YG    E G  G   G P G QGG
Sbjct:    5 DYYEVLGVERGVDEKALKSAYRKLAMKYHPDQNAGDTAAEDKFKEVGEAYAILSDPQKRAAYDRYGHGAFENG--GMGGGSPFGGQGG 90          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CBPA_PSEE47.482e-1437.70Curved DNA-binding protein OS=Pseudomonas entomoph... [more]
MAS5_YEAST9.772e-1444.79Mitochondrial protein import protein MAS5 OS=Sacch... [more]
DNJ6A_XENLA9.772e-1442.72DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNAJ_VIBHB9.772e-1444.05Chaperone protein dnaJ OS=Vibrio harveyi (strain A... [more]
DNAJ_TRIEI9.772e-1443.42Chaperone protein dnaJ OS=Trichodesmium erythraeum... [more]
DNAJ_RHISN9.772e-1442.39Chaperone protein dnaJ OS=Rhizobium sp. (strain NG... [more]
DNAJ_RHILE9.772e-1444.57Chaperone protein dnaJ (Fragment) OS=Rhizobium leg... [more]
DNAJ_MYCMO9.772e-1442.86Chaperone protein dnaJ OS=Mycoplasma mobile GN=dna... [more]
DNAJ_IDILO9.772e-1442.86Chaperone protein dnaJ OS=Idiomarina loihiensis GN... [more]
DNAJ_HYPNA9.772e-1447.73Chaperone protein dnaJ OS=Hyphomonas neptunium (st... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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