FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA2 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain JH1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDA-GHPGNQ-GGYTYFTSGG 450
            D Y+VLG+ ++AS+ EI+KA+ KLS +YHPD NK + A EKF EI+ AY++LSD+ KR  YD +G + G  GF   G  G+  GG++ F  GG
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHD-GPQGFGGQGFNGSDFGGFSGFGGGG 96          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA1 (Chaperone protein dnaJ OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDA-GHPGNQ-GGYTYFTSGG 450
            D Y+VLG+ ++AS+ EI+KA+ KLS +YHPD NK + A EKF EI+ AY++LSD+ KR  YD +G + G  GF   G  G+  GG++ F  GG
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHD-GPQGFGGQGFNGSDFGGFSGFGGGG 96          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCPU (Chaperone protein dnaJ OS=Mycoplasma pulmonis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 42/96 (43.75%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  169 KTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE----KGSPGFDAGHP--GNQGGYTYF 438
            K  D YK+LG++++A+++EI+KA+ KL++++HPD++ +K ++ K  EIN AY++LS+ EK+  YD YG E     G  GF+AG    GN GG++ F
Sbjct:    3 KKEDYYKILGIDKSANEKEIKKAYRKLAMEHHPDRSSSKESEAKMREINEAYEVLSNPEKKAIYDKYGHEAANNPGFNGFNAGSAGFGNFGGFSNF 98          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACCB (Chaperone protein dnaJ OS=Lactobacillus casei (strain BL23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            D Y+ LGV R+A    I+KAF KLS +YHPD N    A++KF +IN AY +LSD +KR  YD YG   G  GF  G    QGG++ F  G  G   F
Sbjct:    6 DYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAAYDQYGSADGPQGF-GGAGAGQGGFSDFGGGQGGFGGF 101          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACC3 (Chaperone protein dnaJ OS=Lactobacillus casei (strain ATCC 334) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            D Y+ LGV R+A    I+KAF KLS +YHPD N    A++KF +IN AY +LSD +KR  YD YG   G  GF  G    QGG++ F  G  G   F
Sbjct:    6 DYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAAYDQYGSADGPQGF-GGAGAGQGGFSDFGGGQGGFGGF 101          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            D Y+VLGV ++AS+ EI+KA+ KLS +YHPD NK + A EKF EI+ AY++LSDE KR  YD +           GH G QGG   F S G G S F
Sbjct:    5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQF-----------GHDGPQGG---FGSQGFGGSDF 87          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_PICTO (Chaperone protein dnaJ OS=Picrophilus torridus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYF 438
            D Y +LGV+RNASQ +I+KAF +L+ +YHPD N  NK A+EKF EI  AY++LSD +KRK+Y    DE G+  F+AG   N   +T+F
Sbjct:    4 DYYAILGVDRNASQDDIKKAFRELAKKYHPDANPGNKEAEEKFKEIAEAYEVLSDPQKRKQY----DETGTTDFNAGSGFNWQDFTHF 87          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCH2 (Chaperone protein dnaJ OS=Mycoplasma hyopneumoniae (strain 232) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 55/120 (45.83%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQE------KFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGG-----YTYFTSG---GPGQSQFTSRPGEWQN 495
            D YK+LGVE++AS  EI+KA+  L   YHPDKN  K+A+E      KF EI  AY+ILSDE KRK+YD +G       F  G  G  G      ++ FTSG   G  Q Q  SRP + +N
Sbjct:    5 DFYKILGVEKSASLTEIKKAYRNLVNIYHPDKNTKKSAEEQKQAEAKFKEIQEAYEILSDETKRKQYDKFGHAAFDQQFGGGSSGFSGFDFGDIFSSFTSGFGFGGSQEQKYSRPLKGEN 124          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ENTFA (Chaperone protein dnaJ OS=Enterococcus faecalis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            D Y+VLG+ + AS  EI+KA+ KLS +YHPD NK   A+EKF E++ AY++LSD +K+  YD Y    G  G D  + G  GG+  F  GG   S F
Sbjct:    6 DYYEVLGLAKGASDDEIKKAYRKLSKKYHPDINKEADAEEKFKEVSEAYEVLSDPQKKAAYDQY----GHAGTDPNYGGGAGGFGGFGGGGFSSSGF 98          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOB8 (Chaperone protein dnaJ OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGSPGFDAGHPGNQGGYTYFTSGGPG 456
            D Y++LG+++ AS  EI++AF KL+++YHPD+N+ N  A+EKF EIN AY +LSD EK+ KYD +G     GS GF     G  GG+  F  GG G
Sbjct:    5 DYYELLGLQKGASDDEIKRAFRKLAVKYHPDRNQGNAEAEEKFKEINEAYQVLSDPEKKAKYDQFGSAAFDGSGGFGG---GGFGGFDGFDMGGFG 97          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STAA23.245e-1749.46Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAA13.245e-1749.46Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_MYCPU3.245e-1743.75Chaperone protein dnaJ OS=Mycoplasma pulmonis GN=d... [more]
DNAJ_LACCB3.245e-1747.42Chaperone protein dnaJ OS=Lactobacillus casei (str... [more]
DNAJ_LACC33.245e-1747.42Chaperone protein dnaJ OS=Lactobacillus casei (str... [more]
DNAJ_STAES4.239e-1750.52Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_PICTO4.239e-1752.27Chaperone protein dnaJ OS=Picrophilus torridus GN=... [more]
DNAJ_MYCH24.239e-1745.83Chaperone protein dnaJ OS=Mycoplasma hyopneumoniae... [more]
DNAJ_ENTFA4.239e-1746.39Chaperone protein dnaJ OS=Enterococcus faecalis GN... [more]
DNAJ_CLOB84.239e-1748.96Chaperone protein dnaJ OS=Clostridium beijerinckii... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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