FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLTE (Chaperone protein dnaJ OS=Chlorobium tepidum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE-KGSPGFDAGHPGNQG---------GYTYFTSGGPGQSQFTSRP 480
            D Y++LGV R+A + EI+KA+ KL+L+YHPDKN  NK A+EKF E+N AY++LS+++KR++YD +G    GS       PG  G          +    SGG G+++    P
Sbjct:    4 DYYEILGVARSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGSGPGGAGYGDINDIFSAFNDMFSGGGGRARTGGSP 115          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGP 453
            D Y +LG+E+ AS  +I+KA+ K +L++HPDKNK+  A+EKF E+  AY++LSD +KR+ YD +G+E G  G   G  G  G + Y   G P
Sbjct:    4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEE-GLKGGAGGTDGQGGTFRYTFHGDP 94          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGP 453
            D Y +LG+E+ AS  +I+KA+ K +L++HPDKNK+  A+EKF E+  AY++LSD +KR+ YD +G+E G  G   G  G  G + Y   G P
Sbjct:    4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEE-GLKGGAGGTDGQGGTFRYTFHGDP 94          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            D Y+VLGV ++AS+ EI+KA+ KLS +YHPD NK + A EKF EI+ AY++LSDE KR  YD +           GH G QGG   F S G G S F
Sbjct:    5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVNYDQF-----------GHDGPQGG---FGSQGFGGSDF 87          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein dnaJ OS=Geobacillus kaustophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGG 426
            D Y++LGV +NA++ EI+KA+ KLS QYHPD NK   A EKF EI  AY++LSD+EKR +YD +G    +  F  G  G QGG
Sbjct:    5 DYYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAPDAAEKFKEIKEAYEVLSDDEKRARYDRFGHADPNETFGGG--GFQGG 85          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_FUSNP (Chaperone protein dnaJ OS=Fusobacterium nucleatum subsp. polymorphum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN------KAAQEKFAEINNAYDILSDEEKRKKYDLYGD---EKGSPGFDAGHPGNQGGYTY 435
            D Y+VLGV++NAS+ +I+KA+ K +++YHPDK  N      K A+EKF EIN AY +LSD EK+++YD +G    E+G  GF  G   N GG+ +
Sbjct:    5 DYYEVLGVDKNASENDIKKAYRKAAMKYHPDKFANATDAEKKDAEEKFKEINEAYQVLSDNEKKQQYDQFGHAAFEQGGAGFGGGF--NAGGFDF 97          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOD6 (Chaperone protein dnaJ OS=Clostridium difficile (strain 630) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGSPGFDAGHPGNQGGYTYFTSGGPGQSQFTSRPGE 486
            D Y+VLG+ + A  +EI+KA+ KL+++YHPD+N  +K A+EKF EIN AY++LSD+ KRK YD +G +   G  GF     G QGG+     GG G   F    G+
Sbjct:    6 DYYEVLGISKGAEAQEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEINEAYEVLSDDTKRKTYDQFGHDGLNGQGGF-----GGQGGF-----GGQGFGGFEDMFGD 101          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJH_SYNY3 (DnAJ-like protein slr0093 OS=Synechocystis sp. (strain PCC 6803) GN=slr0093 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYG---DEKGSPGFDAGHPGNQGGYTYFTSGGPGQSQF 468
            D Y++LGV + AS+ EI+K F KL+L+YHPDKN  +KAA+EKF EI+ AY++LSD EKR+KYD +G    + G+ G  +G  G   G  +   GG   SQ+
Sbjct:    8 DYYQILGVTKTASEAEIKKQFRKLALKYHPDKNPGDKAAEEKFKEISEAYEVLSDPEKRQKYDQFGRYWQQAGTAGQPSGSYGPGVGVDF---GGFDFSQY 105          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOK5 (Chaperone protein dnaJ OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKN-KAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPG 456
            D Y++LG+++ AS ++I+KAF KL+L+YHPD+N N K A+EKF EIN AY +L+D +K+ +YD +G    + G   G  G  GG+ +   GG G
Sbjct:    5 DYYEILGLDKGASDQDIKKAFRKLALKYHPDRNPNDKKAEEKFKEINEAYQVLTDPQKKAQYDQFGTTDFNGG---GFQGGFGGFDFSDLGGFG 95          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB1_HUMAN (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGS-PGFDAGHPGNQGGYTYFTSGGP 453
            D Y+ LG+ R AS  EI++A+ + +L+YHPDKNK   A+EKF EI  AYD+LSD  KR+ +D YG+E  KGS P   +G   N   ++Y   G P
Sbjct:    4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGPSGGSGGGANGTSFSYTFHGDP 98          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CHLTE4.239e-1741.96Chaperone protein dnaJ OS=Chlorobium tepidum GN=dn... [more]
DNJB4_PONAB5.536e-1745.65DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_HUMAN5.536e-1745.65DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]
DNAJ_STAEQ5.536e-1750.52Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_GEOKA5.536e-1753.01Chaperone protein dnaJ OS=Geobacillus kaustophilus... [more]
DNAJ_FUSNP5.536e-1747.37Chaperone protein dnaJ OS=Fusobacterium nucleatum ... [more]
DNAJ_CLOD65.536e-1745.28Chaperone protein dnaJ OS=Clostridium difficile (s... [more]
DNAJH_SYNY35.536e-1748.51DnAJ-like protein slr0093 OS=Synechocystis sp. (st... [more]
DNAJ_CLOK57.230e-1745.74Chaperone protein dnaJ OS=Clostridium kluyveri (st... [more]
DNJB1_HUMAN9.443e-1747.37DnaJ homolog subfamily B member 1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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