FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_THETN (Chaperone protein dnaJ OS=Thermoanaerobacter tengcongensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGG 450
            D Y++LGV+RNASQ EI+KA+ +L+ +YHPD N  +K A++KF EIN AY+ILSD +KR +YD +    G   F+ G    QGG+  F  GG
Sbjct:    5 DLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQF----GHAAFEQG-GSQQGGFGDFGEGG 91          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_MAGSA (Chaperone protein dnaJ OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGPGQS 462
            D Y++LGVE+ AS  +I+KA+ K ++Q+HPD+N   A A++KF EIN AYD+L DE+KR  YD +    G   F+ G PG  GG  +   GG G S
Sbjct:    5 DYYELLGVEKGASPDDIKKAYRKQAMQFHPDRNPGNADAEQKFKEINEAYDVLKDEQKRAAYDRF----GHAAFEQGGPGGGGGGGFGGFGGGGFS 96          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_LACJO (Chaperone protein dnaJ OS=Lactobacillus johnsonii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGSPGFDA---GHPGNQGGYT 432
            D Y VLGV++NAS+ EI KA+ KL+ +YHPD N    A+EK+ E+N AY++L D++KR +YD +G     G  GF     G  G QGGY+
Sbjct:    5 DYYDVLGVDKNASESEISKAYRKLAKKYHPDLNHEPGAEEKYKEVNEAYEVLHDKQKRAQYDQFGQAGVNGQGGFGGQGFGGFGGQGGYS 94          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_ACICJ (Chaperone protein dnaJ OS=Acidiphilium cryptum (strain JF-5) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  166 AKTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYG----DEKGSPGFDAGHPGNQGGYTYFTSG 447
            AKT D Y++LGV R AS  E++KA+ KL++QYHPD+N  + AA++KF +IN AYD+L DE+KR  YD +G    +  G PG   G  G  GG+  F  G
Sbjct:    2 AKT-DYYELLGVSRGASADELKKAYRKLAMQYHPDRNPGDAAAEQKFKDINEAYDVLKDEQKRAAYDRFGHAAFENGGGPG-AGGFGGGFGGFGGFEGG 98          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJB4_BOVIN (DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSGGP 453
            D Y +LG+E+ AS  +I+KA+ K +L++HPDKNK+  A+E+F E+  AY++LSD +KR+ YD +G+E G  G   G  G  G + Y   G P
Sbjct:    4 DYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKSPQAEERFKEVAEAYEVLSDPKKREIYDQFGEE-GLKGGAGGTDGQGGTFRYTFHGDP 94          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOAB (Chaperone protein dnaJ OS=Clostridium acetobutylicum GN=dnaJ PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYG--DEKGSPGF 396
            D Y+VLG+E+ AS  EI+KAF KL+++YHPDKN+ NK A+EKF EIN AY +LSD +K+  YD +G  D  G  GF
Sbjct:    5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNRGNKEAEEKFKEINEAYQVLSDPDKKANYDRFGTADFNGGGGF 80          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  163 KAKTVDPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEK------FAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPG---NQGGYTYFTSGGPG 456
            K+   D YK+LGV + A + EI+KA+ KL+LQYHPDKN     +EK      F +I  AY +LSDE+K+++YD+  DE G P FDA   G   N     +F  GG G
Sbjct:  356 KSLRKDYYKILGVSKEAGETEIKKAYRKLALQYHPDKNNQLPEEEKAQAEKMFKDIGEAYSVLSDEKKKRQYDMGQDENGMP-FDADMGGVDINSVFSQFFNQGGMG 461          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_PELLD (Chaperone protein dnaJ OS=Pelodictyon luteolum (strain DSM 273) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE-KGSPGFDAGHPGNQGGYTYFT----------SGGPGQSQ 465
            D Y+VLGV R+A + EI+KA+ KL+L+YHPDKN  NK A++ F E+N AY++LS+++KR++YD +G    GS     G  G  GG   F+           GG G SQ
Sbjct:    4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKDAEDHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGGGQYGGGADFSDIFSAFNDMFGGGGGGSQ 111          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_MICAN (Chaperone protein dnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGY-----TYFTSGGPGQSQFTSR 477
            D Y++LGV R+A + +I++A+ +L+ +YHPD NK   A+E F EIN AY+ILS+ E R +YD +G+   S G     P N GG+     T F+  G    Q T+R
Sbjct:    4 DYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNRYDRFGEAGVSGGAAGFDPDNMGGFADIFETIFSGFGGMGGQATAR 108          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYFTSG-GPGQSQF 468
            D Y++LGV RNA+Q EI++A+ +L  QYHPD NK+ +A EKF EIN AY++LSD +KR +YD +           GH G+  GY  F  G  PG   F
Sbjct:    6 DYYEILGVPRNATQDEIKQAYRRLVRQYHPDLNKDPSAHEKFKEINEAYEVLSDPQKRAQYDQF-----------GHVGDFSGYGDFQGGWQPGGFDF 92          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_THETN9.443e-1750.00Chaperone protein dnaJ OS=Thermoanaerobacter tengc... [more]
DNAJ_MAGSA9.443e-1746.88Chaperone protein dnaJ OS=Magnetospirillum magneti... [more]
DNAJ_LACJO9.443e-1747.78Chaperone protein dnaJ OS=Lactobacillus johnsonii ... [more]
DNAJ_ACICJ9.443e-1748.48Chaperone protein dnaJ OS=Acidiphilium cryptum (st... [more]
DNJB4_BOVIN1.233e-1644.57DnaJ homolog subfamily B member 4 OS=Bos taurus GN... [more]
DNAJ_CLOAB1.233e-1656.58Chaperone protein dnaJ OS=Clostridium acetobutylic... [more]
DNJC7_DICDI1.611e-1644.86DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
DNAJ_PELLD1.611e-1644.44Chaperone protein dnaJ OS=Pelodictyon luteolum (st... [more]
DNAJ_MICAN1.611e-1641.90Chaperone protein dnaJ OS=Microcystis aeruginosa (... [more]
DNAJ_DICT61.611e-1646.94Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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