FC930188

Overview
NameFC930188
Unique NameFC930188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOPE (Chaperone protein dnaJ OS=Clostridium perfringens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE--KGSPGFDAGHPG--NQGGYTYFTSGGPG 456
            D Y+VLG+++ AS  EI++AF K++++YHPD+N  +K A+E F E+N AYD+L D +K+ KYD +G     GS GF  G  G  + GG+ +   GG G
Sbjct:    5 DYYEVLGLQKGASDDEIKRAFRKMAMKYHPDRNPGDKEAEENFKEVNEAYDVLKDPDKKAKYDQFGHAAFDGSGGFGGGGFGGFDAGGFDFSEMGGFG 102          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLL2 (Chaperone protein dnaJ OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDE-KGSPGFDAGHPGNQGGYTYF 438
            D Y+VLGV R+AS+ EI+KA+ KL+LQYHPDKN  NK A+E F E+N AY++LS+++KR++YD +G    GS           GG T F
Sbjct:    4 DYYEVLGVSRSASKDEIKKAYRKLALQYHPDKNPDNKDAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGAGGAYAGGATDF 92          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BACP2 (Chaperone protein dnaJ OS=Bacillus pumilus (strain SAFR-032) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQGGYTYF 438
            D Y+VLGV ++AS+ EI+KA+ KLS +YHPD NK   + EKF E+  AY+ LSD++KR +YD +G    + GF  G  G  G +  F
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRSQYDQFGHTDPNQGFGGGGFGGGGDFGGF 91          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DNAJ_BACA2 (Chaperone protein dnaJ OS=Bacillus amyloliquefaciens (strain FZB42) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGH--PGNQGGYTY 435
            D Y+VLGV ++AS+ EI+KA+ KLS +YHPD NK   A EKF E+  AY+ LSD++KR +YD +G    + GF  G    G+ GG+ +
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKESGADEKFKEVKEAYEALSDDQKRAQYDQFGHTDPNQGFGGGFGGGGDFGGFGF 92          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJB11_RAT (DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D YK+LGV R+AS ++I+KA+ KL+LQ HPD+N +   AQEKF ++  AY++LSD EKRK+YD YG+E    G   GH  + G
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEE----GLKDGHQSSHG 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJB11_PONAB (DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D YK+LGV R+AS ++I+KA+ KL+LQ HPD+N +   AQEKF ++  AY++LSD EKRK+YD YG+E    G   GH  + G
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEE----GLKDGHQSSHG 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJB11_MOUSE (DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D YK+LGV R+AS ++I+KA+ KL+LQ HPD+N +   AQEKF ++  AY++LSD EKRK+YD YG+E    G   GH  + G
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEE----GLKDGHQSSHG 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D YK+LGV R+AS ++I+KA+ KL+LQ HPD+N +   AQEKF ++  AY++LSD EKRK+YD YG+E    G   GH  + G
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEE----GLKDGHQSSHG 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D YK+LGV R+AS ++I+KA+ KL+LQ HPD+N +   AQEKF ++  AY++LSD EKRK+YD YG+E    G   GH  + G
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDSEKRKQYDTYGEE----GLKDGHQSSHG 103          
BLAST of FC930188 vs. ExPASy Swiss-Prot
Match: DJB11_BOVIN (DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  178 DPYKVLGVERNASQREIQKAFHKLSLQYHPDKNKNKA-AQEKFAEINNAYDILSDEEKRKKYDLYGDEKGSPGFDAGHPGNQG 423
            D YK+LGV R+AS ++I+KA+ KL+LQ HPD+N +   AQEKF ++  AY++LSD EKRK+YD YG+E    G   GH  + G
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDSEKRKQYDTYGEE----GLKDGHQSSHG 103          
The following BLAST results are available for this feature:
BLAST of FC930188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CLOPE1.611e-1644.90Chaperone protein dnaJ OS=Clostridium perfringens ... [more]
DNAJ_CHLL21.611e-1650.56Chaperone protein dnaJ OS=Chlorobium limicola (str... [more]
DNAJ_BACP21.611e-1647.13Chaperone protein dnaJ OS=Bacillus pumilus (strain... [more]
DNAJ_BACA21.611e-1647.73Chaperone protein dnaJ OS=Bacillus amyloliquefacie... [more]
DJB11_RAT1.611e-1651.81DnaJ homolog subfamily B member 11 OS=Rattus norve... [more]
DJB11_PONAB1.611e-1651.81DnaJ homolog subfamily B member 11 OS=Pongo abelii... [more]
DJB11_MOUSE1.611e-1651.81DnaJ homolog subfamily B member 11 OS=Mus musculus... [more]
DJB11_HUMAN1.611e-1651.81DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
DJB11_CANFA1.611e-1651.81DnaJ homolog subfamily B member 11 OS=Canis famili... [more]
DJB11_BOVIN1.611e-1651.81DnaJ homolog subfamily B member 11 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC34004G01EF PostHarvC1 Citrus clementina cDNA clone C34004G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930188 ID=FC930188; Name=FC930188; organism=Citrus clementina; type=EST; length=669bp
GACCCCGTCGCTATTGTTATTAATTGTGATCTTTTTCATAACGCACTTCA
CTCCGTTCAATAATAAACCTCTAAAATCTGTAGTGAGATGCAAGGTGCAA
AAATGAAGGTTCGTTTCGCACTATCGATTTTTCTGTTTTCAACGCTTTTG
ATCTTCAACGCGAAAGCCAAAACCGTCGATCCGTACAAGGTTCTTGGTGT
TGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAAGCTTTCCACAAGCTCT
CTCTTCAATATCACCCGGACAAGAACAAAAATAAGGCCGCTCAGGAGAAG
TTCGCTGAGATTAATAATGCATATGATATTTTATCTGATGAAGAGAAGAG
GAAAAAATATGATTTGTATGGGGATGAGAAGGGCAGTCCTGGATTTGATG
CTGGGCATCCTGGGAATCAAGGTGGGTATACATACTTCACAAGTGGTGGA
CCGGGACAAAGCCAGTTTACCTCTAGACCTGGTGAATGGCAGAATATGGG
GGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCCTTTGGCGGTACTGGTG
GTTCAAGTTCATTTGGTTTTGGTCTAGATGATATCTTCTCTGACTTTTTT
GGCAGTAGTTTTGGAGGAGGACGCCAATTTGGTGGTTTTAGTGGTTCAAC
TGGTTCTCAGTCTCAATCT
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