FC930192

Overview
NameFC930192
Unique NameFC930192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14856 contig Ccv1_Contig14856:4..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930192 vs. ExPASy Swiss-Prot
Match: BETB_BRUME (Betaine aldehyde dehydrogenase OS=Brucella melitensis GN=betB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 3
Query:  207 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 707
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930192 vs. ExPASy Swiss-Prot
Match: BETB_BRUMB (Betaine aldehyde dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 3
Query:  207 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 707
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930192 vs. ExPASy Swiss-Prot
Match: BETB_BRUAB (Betaine aldehyde dehydrogenase OS=Brucella abortus GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 3
Query:  207 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 707
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930192 vs. ExPASy Swiss-Prot
Match: BETB_BRUA2 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain 2308) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 3
Query:  207 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 707
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930192 vs. ExPASy Swiss-Prot
Match: BETB_BRUA1 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain S19) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 3
Query:  207 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 707
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK 175          
BLAST of FC930192 vs. ExPASy Swiss-Prot
Match: BADH_GADCA (Betaine aldehyde dehydrogenase OS=Gadus callarias GN=aldh9A1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 43/165 (26.06%), Postives = 74/165 (44.85%), Query Frame = 3
Query:  225 KWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKVPP 716
            K K    T     PA  + +  +V    E+ ++ +++   A   W ++   +R  V+ +    +RE+  ++ +L  I  GK + E   ++       ++  GL+  L+G  I  + P      T   PLGV   I A+N+P  +  W    AL CGN VV+K  P
Sbjct:   30 KSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTLSGQHI--QLPGGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPALACGNAVVFKPSP 192          
BLAST of FC930192 vs. ExPASy Swiss-Prot
Match: ALDH_RHORT (Aldehyde dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=Rru_A0931 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 45/168 (26.79%), Postives = 74/168 (44.05%), Query Frame = 3
Query:  213 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 707
            F++G W+    G    ++ P   +       ++ ED    + A   A+  W    A +R  ++ +I D L++ L  L  + SI+ GK + E +  ++   ID   +     R   GS+   +    +      PLGVVG I  +NFP  +  W    AL  GNC+V K
Sbjct:   22 FIDGTWQPPVRGEYFDNVTPITGKVFCKAARSTEEDITLALDAAHAAADRWGRTTAAERALILNRIADRLQDNLETLAYVESIDNGKPIRETLAADIPLAIDHFRYFAACIRAQEGSLSQIDETT-IAYHFNEPLGVVGQIIPWNFPILMATWKLAPALAAGNCIVLK 188          
The following BLAST results are available for this feature:
BLAST of FC930192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
BETB_BRUME8.902e-1127.98Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_BRUMB8.902e-1127.98Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_BRUAB8.902e-1127.98Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA28.902e-1127.98Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA18.902e-1127.98Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BADH_GADCA8.902e-1126.06Betaine aldehyde dehydrogenase OS=Gadus callarias ... [more]
ALDH_RHORT8.902e-1126.79Aldehyde dehydrogenase OS=Rhodospirillum rubrum (s... [more]

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Properties
Property NameValue
Genbank descriptionC34004G05EF PostHarvC1 Citrus clementina cDNA clone C34004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930192 ID=FC930192; Name=FC930192; organism=Citrus clementina; type=EST; length=727bp
GGCTCTCTTTGATCTTCTTATTCAACAAGTAACCAAAACCTCTAATTCAT
TCCAACACACTTTCATGTGACATTGTCTTACATAACTAATCTTTTTTCAA
TCCTCAAAGTTCTTACAGTTTCTTTTACATTTCAAATCCAAAGATGGAAT
TTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGATCGGCTTAAGTCCAGAA
ACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGGCACATGGTCCTACTGT
CTCCTCTATCAATCCTGCTAACAATCAGAAAATTGCTACTGTTGTGGAGG
CTTCACTTGAGGATTATGAGGAAGGCATGAAAGCTTGCAGCGAAGCATCT
AAGATATGGATGGAACTTCCAGCTCCTAAGAGAGGGGAGGTTGTTAGACA
AATAGGTGATGCATTGAGAGAAAAACTGCATCATCTCGGCCGTCTTCTTT
CAATTGAGATGGGAAAAATTCTTCCAGAAGGAATTGGGGAAGTCCAAGAA
GTTATTGACATGTGTGATTTTGCTGTGGGTTTAAGCCGGCAACTTAATGG
ATCAGTAATACCTTCAGAACGTCCCAATCATATGATGTTAGAGACATGGA
ATCCTCTTGGGGTAGTTGGTGTCATTACAGCATTTAACTTCCCGTGTGCT
GTTCTTGGATGGAATGCATGCATTGCACTAGTCTGCGGCAACTGTGTTGT
TTGGAAAGTGCCCCCACACTCCTTTGA
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