FC930196

Overview
NameFC930196
Unique NameFC930196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: BAICD_EUBSP (Bile acid-inducible operon protein CD OS=Eubacterium sp. (strain VPI 12708) GN=baiCD PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 52/185 (28.11%), Postives = 79/185 (42.70%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNNVPQPHAILYYSQRTTKGG--LLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +P+ +  L L +R+VL  +  + + N       ++ Y     K G  L I E   +      Y    G +T   VE  K + DAVH  GG    Q+WH G                      +PQ+  +  +  +   P  L  + I +IV +F   AR A++AGFD +E H AH YL  +F+
Sbjct:    6 LFSPFKVRGLELKNRIVLPGMNTKMAKNKHDIGEDMIAYHVARAKAGCALNIFECVALCPAPHAYMYM-GLYTDHHVEQLKKLTDAVHEAGGKMGIQLWHGG---------------------FSPQMFFDETNTLE--TPDTLTVERIHEIVEEFGRGARMAVQAGFDAVEFHAAHSYLPHEFL 166          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACCZ (NADPH dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=namA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 49/186 (26.34%), Postives = 81/186 (43.55%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    V   H + Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +  +      + I   +   TP                 +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLVHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAIPFNETMKTPV---------------EMSKHQIKDTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACHK (NADPH dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=namA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 51/186 (27.42%), Postives = 85/186 (45.70%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +  + + +  AP +    P    ++           P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKA--ELETDALAPSAI---PFNETMKI----------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACC3 (NADPH dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=namA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 52/188 (27.66%), Postives = 81/188 (43.09%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKI-----------------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACC1 (NADPH dehydrogenase OS=Bacillus cereus (strain ATCC 10987) GN=namA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 53/188 (28.19%), Postives = 81/188 (43.09%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   V  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENGDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAIPFNETMKM-----------------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACC0 (NADPH dehydrogenase OS=Bacillus cereus (strain AH820) GN=namA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 49/186 (26.34%), Postives = 81/186 (43.55%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNQDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    V   H + Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +  +      + +   +   TP                 +   +I   V  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLVHYGTRAAGQVGLVMIEATAVLPGGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKTPV---------------EMSKHQIKDTVLAFQQAAIRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACAH (NADPH dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=namA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 52/188 (27.66%), Postives = 81/188 (43.09%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKI-----------------PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACCQ (NADPH dehydrogenase OS=Bacillus cereus (strain Q1) GN=namA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 52/188 (27.66%), Postives = 81/188 (43.09%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    +   H I Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   V  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSKNEDGQITNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKATTFIHDNGAKAAIQLAHAGRKAELETDALAPSAIPFNETMKM-----------------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACC7 (NADPH dehydrogenase OS=Bacillus cereus (strain AH187) GN=namA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 52/188 (27.66%), Postives = 81/188 (43.09%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    +   H I Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   V  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSKNEDGQITNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKATTFIHDNGAKAAIQLAHAGRKAELETDALAPSAIPFNETMKM-----------------PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLINEFL 175          
BLAST of FC930196 vs. ExPASy Swiss-Prot
Match: NAMA_BACAN (NADPH dehydrogenase OS=Bacillus anthracis GN=namA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 52/188 (27.66%), Postives = 81/188 (43.09%), Query Frame = 3
Query:  141 LLTPYNMGSLNLSHRVVLAPLTRQRSYNN---VPQPHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGTWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSN--QDYQPNGQAPISSTDKPLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFM 689
            L +PY +  + L +R+V++P+    S N    V   H I Y ++   + GL++ EAT V    +      G W    +E        +H  G     Q+ H GR +    D       P + T K                  P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+
Sbjct:    5 LFSPYTIKDVTLKNRIVMSPMCMYSSENEDGQVTNFHLIHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDSLIEGLHKTTTFIHDNGAKAAIQLAHAGRKAELETDALAPSAVPFNETMKI-----------------PVEMSIHQIKNTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFL 175          
The following BLAST results are available for this feature:
BLAST of FC930196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
BAICD_EUBSP3.813e-1228.11Bile acid-inducible operon protein CD OS=Eubacteri... [more]
NAMA_BACCZ6.504e-1226.34NADPH dehydrogenase OS=Bacillus cereus (strain ZK ... [more]
NAMA_BACHK8.495e-1227.42NADPH dehydrogenase OS=Bacillus thuringiensis subs... [more]
NAMA_BACC38.495e-1227.66NADPH dehydrogenase OS=Bacillus cereus (strain 03B... [more]
NAMA_BACC18.495e-1228.19NADPH dehydrogenase OS=Bacillus cereus (strain ATC... [more]
NAMA_BACC08.495e-1226.34NADPH dehydrogenase OS=Bacillus cereus (strain AH8... [more]
NAMA_BACAH8.495e-1227.66NADPH dehydrogenase OS=Bacillus thuringiensis (str... [more]
NAMA_BACCQ1.109e-1127.66NADPH dehydrogenase OS=Bacillus cereus (strain Q1)... [more]
NAMA_BACC71.109e-1127.66NADPH dehydrogenase OS=Bacillus cereus (strain AH1... [more]
NAMA_BACAN1.109e-1127.66NADPH dehydrogenase OS=Bacillus anthracis GN=namA ... [more]

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Properties
Property NameValue
Genbank descriptionC34004G09EF PostHarvC1 Citrus clementina cDNA clone C34004G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930196 ID=FC930196; Name=FC930196; organism=Citrus clementina; type=EST; length=746bp
GAATCATTTTATTTTCAGACGCGTTAAGGATTCTCAATTTGCTTGTAATT
CTACTAAACATGGGAAACAGAGCAGAGGAGGCTAAGCAAAATCAAGAAGA
GAACAACGGTAACATGGCCATTGAAACTCCCATCATCCCTCTTCTCACTC
CTTACAATATGGGCAGTCTCAATCTTTCTCATAGAGTTGTTTTGGCACCA
CTGACTAGACAGAGATCATACAACAATGTTCCTCAGCCACATGCCATTTT
GTATTACTCTCAAAGAACCACCAAAGGGGGTTTGCTTATAGCCGAAGCCA
CTGGAGTTTCCGACACTGCTCAAGGGTATCCAGATACACCTGGTACCTGG
ACAAAGGAGCAAGTTGAAGCATGGAAACCGATTGTAGATGCTGTTCATGC
CAAAGGTGGGATCTTCTTTTGTCAGATTTGGCACGTTGGCAGGGTTTCAA
ATCAAGATTATCAGCCAAATGGTCAAGCTCCAATTTCCAGTACAGACAAG
CCATTGACCCCTCAAATCCGCGCTAATGGTGTTGATATTGCACAATTCAC
TCCTCCAAGGCGGCTAAGGACAGATGAAATCCCTCAAATTGTGAATGATT
TCAGGCTTGCTGCAAGAAACGCAATTGAGGCTGGTTTCGATGGCATTGAG
CTCCACGGTGCACATGGCTACCTAATTGACCAATTTATGAAGGATCAGTG
AATGATCGAACAGACAGTATGGAGATCCTAGAGAATCGTGCGTTTG
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