FC930201

Overview
NameFC930201
Unique NameFC930201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  412 DPEAKLLFIIRIRGINAIDPKTK--KILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKR------GYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            D +  LLFI+R+RG  A++   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S+R LI KR      G  + +   I L D  I+E+ LG  GIIC+ED+IH
Sbjct:  136 DGKPALLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIH 252          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  412 DPEAKLLFIIRIRGINA--IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            D E  LLF+IR++G  A  I  K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S+R LI KR           + + I L D  I+E+ LG  G+IC+ED+IH
Sbjct:  132 DGEPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIH 248          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 1
Query:  418 EAKLLFIIRIRGINA--IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRG---YGKLDKQ---RIALTDKLIIEKALGKFGIICMEDLIH 738
            E +LLF++R++G  A  I  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS+R LI KR    Y + D++    I L D  I+E+ LG  G+IC++D+IH
Sbjct:  133 EEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIH 247          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.128e-15
Identity = 43/122 (35.25%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  373 LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            L++++ +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +R+L+Y +G G+    R+ LT++ I +   GK  I C+E+L+H
Sbjct:   63 LEKKSSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVH 182          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 66/219 (30.14%), Postives = 113/219 (51.60%), Query Frame = 1
Query:  124 PESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQVIXXXXXXXXXXXXIWINKILFFP*F*EKVLIQLKREA---KLKGGFYVDPEAKLLFIIRI----RGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRG-YGKLDKQ----RIALTDK--LIIEKALGKFGIICMEDLIH 738
            PE +L+K+K N+   L K+++   +++ +LE +K    R+K++ +  AE ++            I             K + + ++++   K+      D  AKLLFIIRI    +G+  +  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+R+L  KR     +D++    RI   D   ++ +K     G IC+EDLIH
Sbjct:    8 PEILLRKRKNNDRKRLEKQEQ---ARQRQLEQKKKNDQRSKKFVR--AETLVSNYKSNELENKRI-------------KHITKFEKQSQADKISQAKEDDESAKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIH 207          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  412 DPEAKLLFIIRIRGINA--IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRG------YGKLDKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            D  A LLF++R+RG  A  I  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S+R L+ KR        G+     + L D  ++E+ LG  G+IC+ED+IH
Sbjct:  107 DGRATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIH 223          
BLAST of FC930201 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 42/112 (37.50%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  427 LLFIIRIRG-INA-IDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKL------DKQRIALTDKLIIEKALGKFGIICMEDLIH 738
            L  I+R  G + A I  K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++VR+L+ KR    +      + +++ L D  ++E+ LG  GIIC+ED+IH
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIH 143          
The following BLAST results are available for this feature:
BLAST of FC930201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_YEAST8.640e-1743.59Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_KLULA2.514e-1641.88Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_CANGA7.314e-1640.87Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RL7_ENCCU2.128e-1535.2560S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_DEBHA4.741e-1530.14Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_ASHGO8.087e-1538.46Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RLP7_PICJA1.686e-1237.50Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionC34004H02EF PostHarvC1 Citrus clementina cDNA clone C34004H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930201 ID=FC930201; Name=FC930201; organism=Citrus clementina; type=EST; length=738bp
GACTCTTATATAACTTGCTCAAAGAAGCTCTCTTATTTGGTTCTTCCGCA
GTCCGATCTTCTACGGCCAGGGGACACGACACTTAAACTCTAGATGGCTG
AAGTAGAAGCCAAGGCGCCAGTTCCAGAGTCTGTCTTGAAGAAGCAGAAG
AGGAATGAGGAATGGGCTTTGGCAAAGAAGCAGGAGCTTGAAACTTCCAA
GAAGAACAAGCTCGAGAGTAGGAAGCTGATTTACAATAGGGCTAAGCAGT
ATGCAAAGGAGTTTGCTGAGCAGGTGATCGTTGTAAACTTCTTCAAAGTT
TAATTTTATTACTATATTTGGATTAACAAGATTCTTTTTTTCCCCTAATT
TTAGGAAAAGGTGTTGATTCAATTGAAGCGTGAAGCTAAATTGAAAGGAG
GGTTTTATGTTGACCCTGAAGCTAAGCTTTTGTTTATCATCCGTATCCGT
GGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAGCTTTTACG
TTTAAGACAGATCTTCAATGGAGTTTTTCTTAAAGTGAACAAAGCTACCA
TGAACATGCTTCATAGGGTTGAACCTTACGTCACCTATGGATACCCCAAT
TTGAAGAGTGTTAGGGAGCTCATTTACAAGAGGGGATATGGAAAGCTAGA
TAAGCAGAGAATTGCTTTGACTGATAAACTCATTATTGAGAAGGCTTTGG
GCAAGTTCGGTATCATCTGCATGGAAGACCTGATCCAT
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