FC930204

Overview
NameFC930204
Unique NameFC930204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3542 contig Ccv1_Contig3542:44..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_RHIME (Glucose-6-phosphate 1-dehydrogenase OS=Rhizobium meliloti GN=zwf PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.051e-15
Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 3
Query:  165 IVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLIND-KSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSR-RLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            +V G +GDLA++K  PAL++   +G   +    I G +R  +S DE R      L    KS      +V +F   + YVS    +E+G+  L K +          EG  R R FY A+ P+++  +S  I+   +   +    TRIVVEKP G+DL S+ +L+  IG++F E Q
Sbjct:   14 VVFGGTGDLAERKLLPALYHRQMEGQF-TEPTRIIGASRASLSHDEYRRFASDALKEHLKSGEFNEAEVEKFTSRLYYVSVDAKSEQGWDDLKKLLE---------EGKDRTRAFYLAVGPAIFSDISEKIRDHKLITRN----TRIVVEKPIGRDLASATELNDTIGKVFREEQ 174          

HSP 2 Score: 20.4014 bits (41), Expect = 7.051e-15
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            I+RIDHYL
Sbjct:  175 IFRIDHYL 182          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_STRPN (Glucose-6-phosphate 1-dehydrogenase OS=Streptococcus pneumoniae GN=zwf PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.723e-14
Identity = 52/174 (29.89%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            + + GASGDLAK+K +P+LF LY+ G L S    + G AR   S +   + +   +++       +EQ  EF     Y S   +  E +  L +++ A  + K   E    +LF+ ++ P  + ++++ +K    N  D  G+ R++VEKPFG D  ++ KL+ ++   F+E Q
Sbjct:    7 VTIFGASGDLAKRKLYPSLFRLYQSGNL-SKHFAVIGTARRPWSKEYFESVVVESILD---LADSTEQAQEFASHFYYQSHDVNDSEHYIAL-RQLQAELNEKYQAE--HNKLFFLSMAPQFFGTIAKHLKS--ENIVDGKGFERLIVEKPFGTDYATASKLNDELLATFDEEQ 171          

HSP 2 Score: 20.4014 bits (41), Expect = 5.723e-14
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            I+RIDHYL
Sbjct:  172 IFRIDHYL 179          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_ANASP (Glucose-6-phosphate 1-dehydrogenase OS=Anabaena sp. (strain PCC 7120) GN=zwf PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.650e-14
Identity = 54/174 (31.03%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            I++ GASGDL  +K  PAL+ L R+  +   E  I G AR + S +  R +++  +    S+    E   +F Q + Y  G  D  E +Q L K + +    K    G+  R+FY ++ P+ +P   + +    M   D     R+V+EKPFG+DL S++ L+A + +  +E Q
Sbjct:   24 IVIFGASGDLTWRKLVPALYKLRRERRIPP-ETTIVGVARREWSHEYFREQMQKGMEEAHSSVELGELWQDFSQGLFYCPGDIDNPESYQKL-KNLLSELDEKRGTRGN--RMFYLSVAPNFFPEAIKQLGGAGM--LDDPYKHRLVIEKPFGRDLASAQSLNAVVQKYCKEHQ 191          

HSP 2 Score: 21.557 bits (44), Expect = 9.650e-14
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            +YRIDHYL
Sbjct:  192 VYRIDHYL 199          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_BORBU (Glucose-6-phosphate 1-dehydrogenase OS=Borrelia burgdorferi GN=zwf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13
Identity = 47/174 (27.01%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            I++ G +G+L++KK  P+LFNL++   +  +   + G++R   +D E R  I+  L  +++       +  FL    YV G ++ +E ++ L K           L+ S   ++Y +  P+ Y  +   +KK  +  S+    ++IV+EKPFG  L++++KL++ +   F+E Q
Sbjct:   11 IVIFGVTGNLSRKKLIPSLFNLFKNKCI--SNFRVIGFSRKIFTDKEFRLYIKDSLWQEET----DSLIEIFLNFFVYVFGDFNEKESYKNLFK----------FLDRSRETIYYLSTSPAFYGPIINHLKKYFL--SEKLTLSKIVLEKPFGSSLETAKKLNSLLYSAFKEDQ 166          

HSP 2 Score: 21.9422 bits (45), Expect = 1.256e-13
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            IYRIDHYL
Sbjct:  167 IYRIDHYL 174          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_SYNE7 (Glucose-6-phosphate 1-dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=zwf PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.015e-12
Identity = 54/185 (29.19%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  132 DNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGS-SRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            D VPE   L  ++ GA+GDL ++K  PA++ ++ +  L   E+ I G AR   SDD  R  +R  +          E  + F Q + +  G+ D  + +Q L   ++    + + L G+   R FY ++ P  +   ++ +    M        TR+VVEKPFG+DL S++ L+A +  +  E Q
Sbjct:   17 DKVPEPQIL--VIFGATGDLTQRKLVPAIYEMHLERRLPP-ELTIVGVARRDWSDDYFREHLRQGVEQFGGGIQAEEVWNTFAQGLFFAPGNIDDPQFYQTLRDRLA----NLDELRGTRGNRTFYLSVAPRFFGEAAKQLGAAGMLADPAK--TRLVVEKPFGRDLSSAQVLNAILQNVCRESQ 192          

HSP 2 Score: 21.9422 bits (45), Expect = 1.015e-12
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            IYRIDHYL
Sbjct:  193 IYRIDHYL 200          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_NOSP7 (Glucose-6-phosphate 1-dehydrogenase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=zwf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.712e-12
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            I++ GASGDL  +K  PAL+ L R+  +   E  I G AR + S +  R +++  +          E   +F Q + Y  G  D  E +Q L K + +    K    G+  R+FY ++ PS +P   + +    M         R+V+EKPFG+DL S++ L+  + +  +E Q
Sbjct:   24 IVIFGASGDLTWRKLVPALYKLRRERRIPP-ETTIVGVARREWSHEYFREQMQKGMEEAHPDVDLGELWQDFSQGLFYSPGDIDNPESYQKL-KTLLSELDEKRGTRGN--RMFYLSVAPSFFPEAIKQLGSGGMLEDPYKH--RLVIEKPFGRDLASAQSLNQVVQKYCKEHQ 191          

HSP 2 Score: 21.557 bits (44), Expect = 1.712e-12
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            +YRIDHYL
Sbjct:  192 VYRIDHYL 199          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_HELPY (Glucose-6-phosphate 1-dehydrogenase OS=Helicobacter pylori GN=zwf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.767e-12
Identity = 48/175 (27.43%), Postives = 90/175 (51.43%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQ-GFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            +++ GA+GDLA +K F +L+ +Y   GF   N+  I    R ++S++E        L+ +K+     E+  EFL  I Y+    D  + F+ L K  + ++            +FYF++ PS + + ++ + K  +N ++    TR+++EKP G DL + +++   I   F+E Q
Sbjct:    6 LVLFGATGDLAMRKLFVSLYEIYTHYGF--KNDSRIIASGRKELSNEEFLT-----LLCEKTQLHSREKGREFLAHISYLCVRLDNPKDFEELSKIATKNKPL----------IFYFSISPSFFATTAQHLAKNALNHAN----TRLILEKPLGHDLKTCKEIFQSISVFFKEEQ 159          

HSP 2 Score: 20.4014 bits (41), Expect = 3.767e-12
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            I+RIDHYL
Sbjct:  160 IFRIDHYL 167          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_HELPJ (Glucose-6-phosphate 1-dehydrogenase OS=Helicobacter pylori J99 GN=zwf PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.390e-11
Identity = 47/175 (26.86%), Postives = 90/175 (51.43%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLY-RQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            +++ GA+GDLA +K F +L+ +Y   GF   N+  I    R ++S++E        L+ +K+     E+  EFL  I Y+    D  + F+ L K  + ++            +FYF++ PS + + ++ + +  +N ++    TR+++EKP G DL + +++   I   F+E Q
Sbjct:    6 LVLFGATGDLAMRKLFVSLYEIYIHYGF--KNDSRIIASGRKELSNEEFLA-----LLCEKTQLHSREKGEEFLTHISYLRVRLDNPKDFEELSKIATNNKPL----------IFYFSISPSFFATTAQNLAQNALNHAN----TRLILEKPLGHDLKTCKEIFQSISAFFKEEQ 159          

HSP 2 Score: 20.4014 bits (41), Expect = 1.390e-11
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            I+RIDHYL
Sbjct:  160 IFRIDHYL 167          
BLAST of FC930204 vs. ExPASy Swiss-Prot
Match: G6PD_DICD3 (Glucose-6-phosphate 1-dehydrogenase OS=Dickeya dadantii (strain 3937) GN=zwf PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.929e-11
Identity = 45/174 (25.86%), Postives = 80/174 (45.98%), Query Frame = 3
Query:  162 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQ 683
            +++ GA GDLA++K  P+L+ L + G +   E  I G  R +   D     +R  L      P      +     + + +   +  EGF+ L   +          + +   + YFA+PPS + ++ R + +  +N+       R+V+EKP G +L SS  ++ Q+ E F E Q
Sbjct:   12 LVIFGAKGDLARRKLLPSLYQLEKAGHIHP-ETRIIGVGRAEWDRDAYIKVVREALETFLKEPLDPALWTTLSNRLDFCNLDVEDTEGFKRLGTMLD---------QQNRTTINYFAMPPSTFGAICRGLGQAGLNKEP----ARVVMEKPLGTNLASSRVINNQVAEFFNECQ 171          

HSP 2 Score: 21.557 bits (44), Expect = 3.929e-11
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  683 IYRIDHYL 706
            +YRIDHYL
Sbjct:  172 VYRIDHYL 179          
The following BLAST results are available for this feature:
BLAST of FC930204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
G6PD_RHIME7.051e-1533.14Glucose-6-phosphate 1-dehydrogenase OS=Rhizobium m... [more]
G6PD_STRPN5.723e-1429.89Glucose-6-phosphate 1-dehydrogenase OS=Streptococc... [more]
G6PD_ANASP9.650e-1431.03Glucose-6-phosphate 1-dehydrogenase OS=Anabaena sp... [more]
G6PD_BORBU1.256e-1327.01Glucose-6-phosphate 1-dehydrogenase OS=Borrelia bu... [more]
G6PD_SYNE71.015e-1229.19Glucose-6-phosphate 1-dehydrogenase OS=Synechococc... [more]
G6PD_NOSP71.712e-1229.89Glucose-6-phosphate 1-dehydrogenase OS=Nostoc punc... [more]
G6PD_HELPY3.767e-1227.43Glucose-6-phosphate 1-dehydrogenase OS=Helicobacte... [more]
G6PD_HELPJ1.390e-1126.86Glucose-6-phosphate 1-dehydrogenase OS=Helicobacte... [more]
G6PD_DICD33.929e-1125.86Glucose-6-phosphate 1-dehydrogenase OS=Dickeya dad... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34004H05EF PostHarvC1 Citrus clementina cDNA clone C34004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930204 ID=FC930204; Name=FC930204; organism=Citrus clementina; type=EST; length=707bp
GATCCTTGTTTTCAACTCCAGCAACAATCTTTCTTCGTTCAGTTTTCAAC
AGAGAGTAGGAGATGGGATCAGGTCAATGGATAATGGAGAAAAGGTCAAG
TTTGAGGAATGATTCATTCTCAAGAGACAATGACAATGTGCCTGAAACTG
GATGTCTTTCAATTATCGTTCTTGGTGCTTCTGGAGATCTTGCCAAGAAA
AAGACTTTTCCTGCTCTCTTCAATCTTTATCGGCAGGGGTTTTTACAGTC
AAATGAAGTTCACATATTTGGCTATGCAAGGACTAAGATTTCGGATGATG
AGCTGAGAAATCGCATTCGTGGATATCTTATCAATGACAAAAGCGCACCG
GGACAATCAGAGCAAGTATCAGAGTTTTTGCAGCTGATTAAATATGTAAG
TGGTTCTTATGACACCGAGGAGGGCTTTCAATTGCTGGACAAGGAAATTT
CTGCACATGAATCATCAAAAAACAGTTTGGAAGGATCATCTCGTAGACTC
TTTTATTTTGCACTTCCACCGTCTGTATATCCATCTGTTTCCAGGATGAT
TAAGAAGTGCTGCATGAATAGATCTGATCTTGGTGGCTGGACACGTATTG
TTGTTGAGAAGCCATTTGGCAAGGATTTGGACTCATCTGAGAAACTTAGT
GCCCAGATTGGGGAGTTGTTTGAAGAACCACAATCTACCGTATTGATCAC
TATTTGG
back to top