FC930211

Overview
NameFC930211
Unique NameFC930211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 299.286 bits (765), Expect = 1.189e-80
Identity = 149/221 (67.42%), Postives = 177/221 (80.09%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRG 664
            KKDIS N R+LRRLRTA ERAKR LSS++QT+IEIDSL+EG+DFYT++TRARFEEL  DLFR  +EPVEK L+D+K+DKS + ++VLVGGSTRIPK+Q+L+ DFFNGKE  +SINPDE           IL+G+ + K QD             ETAGG+MT LIPRN+TIPTKK + FSTY+DNQPGVLIQV+EGERTRT+DNNLLGKFELSGIPPAPRG
Sbjct:  248 KKDISNNQRSLRRLRTAAERAKRALSSSSQTSIEIDSLFEGMDFYTSLTRARFEELCADLFRSTLEPVEKVLKDSKLDKSQIDEIVLVGGSTRIPKIQKLVSDFFNGKEPNRSINPDEAVAYGAAVQAAILTGDQSTKTQDLLLLDVAPLSLGIETAGGIMTKLIPRNSTIPTKKSETFSTYADNQPGVLIQVFEGERTRTKDNNLLGKFELSGIPPAPRG 468          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.189e-80
Identity = 157/222 (70.72%), Postives = 176/222 (79.28%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEK-VQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRG 664
            KKD+S N RALRRLRTACERAKRTLSS AQT+IEIDSL+EGIDFYT+ITRARFEEL  DLFR  MEPVE+ LRDAK+DKSSVH++VLVGGSTRIPK+Q+L+ D+FN KE  KSINPDE           ILSG+ + K   +             ETAGGVMT L+ RNTTIPTKK + FSTYSDNQPGVLIQVYEGER RT+DNNLLGKFEL+GIPPAPRG
Sbjct:  248 KKDLSTNARALRRLRTACERAKRTLSSAAQTSIEIDSLFEGIDFYTSITRARFEELCQDLFRGTMEPVERVLRDAKIDKSSVHEIVLVGGSTRIPKIQRLVSDYFN-KEANKSINPDEAVAYGAAVQAAILSGDTSSKSTNEILLLDVAPLSVGIETAGGVMTPLVKRNTTIPTKKSETFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRG 468          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP71_PARBA (Heat shock 70 kDa protein 1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-1 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.648e-80
Identity = 153/220 (69.55%), Postives = 174/220 (79.09%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEK-VQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAP 658
            KKD+S N RALRRLRTACERAKRTLSS AQT+IEIDSLYEGIDFYT+ITRARFEEL  DLFR  M+PVE+ LRDAK+DKSSVH++VLVGGSTRIP++Q+L+ DFFNGKE  KSINPDE           ILSG+   K   +             ETAGGVMT LI RNTTIPTKK + FST++DNQPGVLIQV+EGER RT++NNLLGKFEL+GIPPAP
Sbjct:  247 KKDLSSNARALRRLRTACERAKRTLSSAAQTSIEIDSLYEGIDFYTSITRARFEELCQDLFRSTMDPVERVLRDAKIDKSSVHEIVLVGGSTRIPRIQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILSGDSTSKSTNEILLLDVAPLSVGIETAGGVMTPLIKRNTTIPTKKSETFSTFADNQPGVLIQVFEGERARTKENNLLGKFELTGIPPAP 466          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP70_PENCI (Heat shock 70 kDa protein (Fragment) OS=Penicillium citrinum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.899e-80
Identity = 156/222 (70.27%), Postives = 176/222 (79.28%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEK-VQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRG 664
            KKD++ N RALRRLRTACERAKRTLSS AQT+IEIDSL+EGIDFYT+ITRARFEEL  DLFR  MEPVE+ LRDAK+DKSSVH++VLVGGSTRIPK+Q+L+ DFFN K+  KSINPDE           ILSG+ + K   +             ETAGGVMT LI RNTTIPTKK + FSTYSDNQPGVLIQV+EGER RT+DNNLLGKFEL+GIPPAPRG
Sbjct:  118 KKDLTTNARALRRLRTACERAKRTLSSAAQTSIEIDSLFEGIDFYTSITRARFEELCQDLFRGTMEPVERVLRDAKIDKSSVHEIVLVGGSTRIPKIQKLVSDFFN-KDANKSINPDEAVAYGAAVQAAILSGDTSSKSTNEILLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSETFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRG 338          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.899e-80
Identity = 153/219 (69.86%), Postives = 174/219 (79.45%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAP 658
            KKD+SG  R  RRLRTACERAKRTLSS+AQT+IEIDSL+EGIDFYT+ITRARFEEL  DLFR  ++PVEK LRDAKM K+ VH++VLVGGSTRIP++Q+L+ DFFNGKE  KSINPDE           IL+G+ +EKVQD             ETAGGVMT LI RNTTIP KK + FSTY+DNQPGVLIQVYEGER RT+DNNLLGKFEL+GIPPAP
Sbjct:  254 KKDLSGKARP-RRLRTACERAKRTLSSSAQTSIEIDSLFEGIDFYTSITRARFEELCADLFRSTLDPVEKVLRDAKMAKNEVHEIVLVGGSTRIPRIQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILAGDQSEKVQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPAKKSETFSTYADNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAP 471          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.006e-79
Identity = 147/221 (66.52%), Postives = 173/221 (78.28%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRG 664
            KKDI GN RALRRLRTACERAKRTLSS++Q ++EIDSLY+GIDFYT+ITRARFEEL  DLF  C+EPVEK L+D K+DK S+ ++VLVGGSTRIPKVQQL+++ FNGKEL KSINPDE           ILSG+ + ++ +             ET GGVMT ++PRNT IP KK Q FST++DNQ GVLIQVYEGERT T+DNNLLGKFEL+GIPPAPRG
Sbjct:  251 KKDIMGNQRALRRLRTACERAKRTLSSSSQASVEIDSLYDGIDFYTSITRARFEELCSDLFNNCIEPVEKVLKDCKLDKKSIDEIVLVGGSTRIPKVQQLIQNLFNGKELNKSINPDEAVAYGAAVQAAILSGDKSSRISELIFIDVAPLSLGIETVGGVMTNIVPRNTIIPCKKTQTFSTHTDNQSGVLIQVYEGERTMTKDNNLLGKFELTGIPPAPRG 471          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.716e-79
Identity = 153/218 (70.18%), Postives = 172/218 (78.90%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPA 655
            KKDIS N RA+RRLR+ACERAKRTLSS+ Q +IEIDSLYEG+DFYT+ITRARFEELN DLFR  ++PVEK LRDAKMDK  +HD+VLVGGSTRIPK+Q+LL+DFFNGKEL KSINPDE           ILSG+ +E VQD             ETAGGVMTVLI RNTTIPTK+ Q F+TYSDNQPGVL QVYE     T+DNNLLGKFEL+GIPPA
Sbjct:  250 KKDISDNKRAVRRLRSACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLDPVEKSLRDAKMDKGQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLNQVYE-VGAMTKDNNLLGKFELTGIPPA 466          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.478e-78
Identity = 152/222 (68.47%), Postives = 174/222 (78.38%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEK-VQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRG 664
            KKD+S N RALRRLRTACERAKRTLSS+AQT+IEIDSL+EGIDF+T+ TRARFEE+  DLFR  MEP E+ LRD K+DKSSVH++VL GGSTRIPKVQ+L+ DFFNGKE CKSINPDE           ILSG+ + K  ++             ETAGGVMT LI RNTTIPTKK + FST+SDNQPGVLIQV+EGER RT+D NL+GKFELSGI PAPRG
Sbjct:  248 KKDLSDNARALRRLRTACERAKRTLSSSAQTSIEIDSLFEGIDFFTSNTRARFEEVGQDLFRGNMEPGERTLRDDKIDKSSVHEIVLGGGSTRIPKVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILSGDTSSKSTKEILLLDVAPLSLGIETAGGVMTALIKRNTTIPTKKSETFSTFSDNQPGVLIQVFEGERARTKDINLMGKFELSGIRPAPRG 469          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.521e-78
Identity = 152/222 (68.47%), Postives = 171/222 (77.03%), Query Frame = 2
Query:    2 KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSG-EGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRG 664
            +KDI+ N RALRRLRTACERAKRTLSS+AQ  IEIDSL++GIDF +TITRARFE++  D FRK MEPV   LRDAK+ KS VH+VVLVGGSTRIPKVQQLL DFFNGKE  KSINPDE           ILSG + ++K+QD             ETAGGVMT LI RNTT+PTKK Q FSTY+DNQPGVLIQ++EGER+ TRDNNLLGKF L GIPP PRG
Sbjct:  252 RKDITENQRALRRLRTACERAKRTLSSSAQAYIEIDSLFDGIDFNSTITRARFEDMCGDYFRKTMEPVAPVLRDAKLSKSQVHEVVLVGGSTRIPKVQQLLSDFFNGKEPNKSINPDEPVAYGATVQAAILSGNDSSQKLQDLLLLDVTPLSLGLETAGGVMTTLIARNTTVPTKKSQTFSTYADNQPGVLIQLFEGERSMTRDNNLLGKFNLDGIPPMPRG 473          
BLAST of FC930211 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.606e-77
Identity = 146/219 (66.67%), Postives = 167/219 (76.26%), Query Frame = 2
Query:    5 KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLRDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPR 661
            KD+S N RALRRLRT CERAKRTLSS+ Q TIEIDSL+EGID+  T++RARFEEL +D FR  + PVEK L+DA MDK SVH+VVLVGGSTRIPK+Q L+++FFNGKE C+SINPDE           ILSG+ +  VQD             ETAGGVMT LI RNTTIP KK Q+F+TY+DNQPGVLIQVYEGER  T+DNNLLGKF L GIPPAPR
Sbjct:  264 KDLSKNSRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYSVTVSRARFEELCIDYFRDTLIPVEKVLKDAMMDKKSVHEVVLVGGSTRIPKIQTLIKEFFNGKEACRSINPDEAVAYGAAVQAAILSGDQSNAVQDLLLLDVCSLSLGLETAGGVMTKLIERNTTIPAKKSQIFTTYADNQPGVLIQVYEGERALTKDNNLLGKFHLDGIPPAPR 482          
The following BLAST results are available for this feature:
BLAST of FC930211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP73_YEAST1.189e-8067.42Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP70_EMENI1.189e-8070.72Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP71_PARBA2.648e-8069.55Heat shock 70 kDa protein 1 OS=Paracoccidioides br... [more]
HSP70_PENCI5.899e-8070.27Heat shock 70 kDa protein (Fragment) OS=Penicilliu... [more]
HSP70_BLAEM5.899e-8069.86Heat shock 70 kDa protein OS=Blastocladiella emers... [more]
HS7C3_DICDI1.006e-7966.52Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP7C_ORYLA1.716e-7970.18Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]
HSP70_CLAHE2.478e-7868.47Heat shock 70 kDa protein OS=Cladosporium herbarum... [more]
HSP70_BRELC5.521e-7868.47Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HSP70_PLAFA1.606e-7766.67Heat shock 70 kDa protein OS=Plasmodium falciparum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005A01EF PostHarvC1 Citrus clementina cDNA clone C34005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930211 ID=FC930211; Name=FC930211; organism=Citrus clementina; type=EST; length=665bp
CAAGAAGGATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTG
CCTGTGAAAGGGCTAAGAGGACCCTGTCATCAACTGCACAGACTACAATT
GAGATTGATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAG
GGCTAGATTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGC
CAGTGGAGAAATGCCTGAGAGATGCTAAGATGGACAAGAGCAGTGTCCAT
GATGTGGTTCTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACT
GTTGCGGGACTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTG
ATGAAGCGGTTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGT
GAGGGTAATGAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCT
ATCGCTGGGTTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAA
GGAACACCACTATTCCAACCAAGAAGGAGCAGGTGTTCTCCACATACTCT
GACAACCAGCCCGGGGTGTTGATCCAGGTCTACGAGGGTGAGCGCACAAG
AACCCGTGACAACAACTTGCTTGGAAAGTTTGAGCTCTCTGGCATTCCTC
CTGCTCCAAGAGGGG
back to top