FC930213

Overview
NameFC930213
Unique NameFC930213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            PV+ L+ ++  G +RA   +KI +ACE+WG F++V+HG+  +L+  + ++  + +    E++ K  ++   KG   V S +      DW    T+F     S + S  PD  E + +  KE++ +L  +A KLL++L E +GLEK  L K        +    V     CP+PDL  GL A
Sbjct:    5 PVVDLSLVN--GEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFKEMVAA--KGLDDVQSEIHD---LDWES--TFFLRHLPSSNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 58/178 (32.58%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  136 IPVISLAGIDDVGG-KRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPE-EKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            IP I L G D     K     + I EA   WG FQV++HGV  +L+  M     +F   PPE  K  +    G+K  ++ +  L      +WR+  T++ Y   + D     D PE   +V  EYS Q+M +   L E+LSEA+GL    L         +++      CP+PDLT G
Sbjct:   64 IPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRD--TFYCY--MAPDPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFG 237          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 60/211 (28.44%), Postives = 95/211 (45.02%), Query Frame = 1
Query:   40 LTALAAEKTLNPSFVRIQDERPKVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSS---HLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            L A  A  +L  SFV   D+ P       S  +P+I      D+   R E+ + I+EA ++ G FQVV+HGV  +++ DM  +  +FF LP  +K         K   + S       GE  K WR+ +            + WPD P+G  +V ++++ Q   V  +LL +L E MG++ +         +  + +     CP PD  LG
Sbjct:    5 LHATPAHVSLPESFVFASDKVPPATKAVVS--LPII------DLSCGRDEVRRSILEAGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSGATYDTGGE--KYWRDCLRLACPFPVDDSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNVILNINHYPSCPNPDKALG 205          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 57/183 (31.15%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFD-MSGGKKGGFIVSSHLQGEV-VKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSK---CPQPDLTLGLNA 672
            P+I+L  I+D G  RA+I ++I +AC++WG F++V+HG+  + +  + ++  + +    EE+ K   +S G +         Q EV   DW    T+F       + S+  D  E + ++ KE++ +L  +A +LL++L E +GLEK  L KA            +S    CP+PDL  GL A
Sbjct:    5 PIINLENINDDG--RAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEAA-------QAEVNDMDWES--TFFLRHLPESNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 53/186 (28.49%), Postives = 95/186 (51.08%), Query Frame = 1
Query:  130 NEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKI-----VVKLLSKCPQPDLTLGLNA 672
            +  PVI++  ++  G +RA   K I +ACE+WG F++V+H +  +L+ ++ RL  E +    E++ K  M+   +G  + ++ +      DW    T+F       + S  PD  +   +V KE++++L  +A ++L++L E +GLEK  L  A       +      V     CP+P+L  GL A
Sbjct:    2 DSFPVINMEKLE--GQERAATMKLINDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELMASKVEGAVVDANDM------DWES--TFFIRHLPVSNLSEIPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRA 177          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 51/202 (25.25%), Postives = 97/202 (48.02%), Query Frame = 1
Query:   79 FVRIQDERPKVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTY-----FSYPKQSRDY--SRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            F+   DE+P +  N    ++P+I L  +        +  + I EAC+  G F VV+HG+  +LISD     + FF +P  EK +     G+  G+  S   +      W+E +++      S  K  +DY         + + +V +EY + +  ++ K++E+L  ++G++++   +   + D  + +     C +PDLTLG
Sbjct:   44 FIWPDDEKPSI--NVLELDVPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLG 243          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSK---CPQPDLTLGLNA 672
            PVI +  ++  G +RA   +KI +ACE+WG F++V+HG+  +L+  + RL  E +    E++ K  ++   KG   V S +      DW    T+F       + S  PD  +   +  KE++++L  +A +LL++L E +GLEK  L KA            +S    CP+P+L  GL A
Sbjct:    5 PVIDMEKLN--GEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVA--TKGLEAVQSEIND---LDWES--TFFLRHLPVSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 63/183 (34.43%), Postives = 85/183 (46.45%), Query Frame = 1
Query:  136 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSH--LQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLS----KCPQPDLTLGL 666
            IP I L G       R  + +KI +A E WG FQV++HG+   ++  M     EF     E K  F  S       + SS+  L      +WR+ +  ++ P    D  R  D P    E+  EYS ++M +   L E+LSEA+GL     T    DMD    + LL      CPQPDLTLGL
Sbjct:   62 IPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGF-YSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAP----DPPRPEDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLN----TNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGL 235          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  160 IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLK-FDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLGL 666
            I D+   R E+ + I+++ +++G  QVV+HG+   ++ +M  +  EFF +P E+K + F     ++      S  +    K W +++    YP  S D   WP KP+   EV   Y+    GVA ++L +L E +GL  +            + +      P P  TLGL
Sbjct:   37 IIDMSRGRDEVRQAILDSGKEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDKAEFFSEDRSERNKLFCGSAFETLGEKYWIDVLELL-YPLPSGDTKDWPHKPQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPDFFVGDISGGRVVVDINYYPPSPNPSRTLGL 205          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 56/181 (30.94%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSK---CPQPDLTLGLNA 672
            P+I+L G++  G K     +KI +ACE+WG F++V HG+  + +  + RL  E +    E++ K  ++   KG   V + +      DW         PK   + S  PD  + +  V KE++ +L  +A +LL++L E +GLEK  L KA    +       +S    CP P+L  GL A
Sbjct:    5 PIINLEGLNGEGRKAT--MEKIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFKELVA--SKGLEAVKTEVND---MDWESTFYLRHLPKS--NISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRA 176          
The following BLAST results are available for this feature:
BLAST of FC930213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACCO1_MALDO1.603e-1431.491-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCH2_ARATH1.603e-1432.581-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
IDS3_HORVU2.735e-1428.442'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
ACCO1_CUCME2.735e-1431.151-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO_PERAE7.958e-1428.491-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
GAOX1_ARATH1.039e-1325.25Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
ACCO_ACTDE1.039e-1331.491-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCH1_ARATH1.039e-1334.431-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
IDS2_HORVU1.357e-1327.65Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
ACCO_PRUMU1.357e-1330.941-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]

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Properties
Property NameValue
Genbank descriptionC34005A03EF PostHarvC1 Citrus clementina cDNA clone C34005A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930213 ID=FC930213; Name=FC930213; organism=Citrus clementina; type=EST; length=691bp
TTGTGCTTCGTTGATCATCAATTAATGGCTCCTTCAACCCTCACCGCCCT
TGCTGCGGAGAAAACCCTCAACCCAAGCTTTGTCCGCATTCAAGATGAGC
GTCCCAAGGTGGCTTATAATGAATTCAGCAATGAAATTCCTGTGATTTCA
CTTGCTGGGATCGATGACGTCGGTGGCAAAAGGGCTGAGATTTGCAAGAA
AATTGTTGAGGCGTGTGAGGACTGGGGAATCTTTCAAGTTGTTGATCATG
GTGTTGATGCTAAGCTTATATCCGATATGACTCGTCTTGCTACAGAATTT
TTCGCCCTGCCCCCTGAGGAGAAGCTCAAGTTTGATATGTCCGGTGGGAA
GAAGGGTGGCTTCATTGTCTCCAGCCACCTTCAGGGTGAAGTAGTAAAAG
ATTGGCGTGAAATAGTGACGTATTTTTCATACCCAAAGCAAAGCCGAGAC
TACTCTCGTTGGCCGGACAAGCCAGAAGGGTGGATGGAAGTAACAAAAGA
ATACAGTGACCAATTAATGGGAGTGGCGTGCAAGCTTCTAGAAGTTTTAT
CAGAGGCAATGGGATTGGAGAAGGAAGCTTTGACTAAAGCATGTGTGGAC
ATGGACCAAAAGATTGTTGTCAAATTACTATCCAAATGCCCACAACCCGA
CCTCACTCTCGGACTCAACGCCACACGGATCCGGGAACATC
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