FC930213

Overview
NameFC930213
Unique NameFC930213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15098 contig Ccv1_Contig15098:115..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 54/182 (29.67%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  139 PVISLAGIDDVGG-KRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSK---CPQPDLTLGLNA 672
            P+I +  +++  G +R+ +  +I +AC +WG FQVV+H +  +L+  + R+  E +    E+K K DM   K    +VS+  Q   + DW    T++   + + + S  PD  + + ++ KE++ Q+  ++ +LL++L E +GLEK  L  A    +       +S    CP+PDL  GL A
Sbjct:    8 PIIDMEKLNNYNGVERSLVLDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHYKKFREQKFK-DMVQTKG---LVSAESQVNDI-DWES--TFYLRHRPTSNISEVPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRA 182          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 53/185 (28.65%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  136 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSR-WPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMD---QKIVVKL--LSKCPQPDLTLGLNA 672
            +P+I L+ I         +   +  AC  WG FQ+ +HGV ++L+ D+  L    F LP + KLK   S     G+ V+        K W E  T    P    D+ + WP     + E+ +EY + +  +A KL+     ++G+E++ +  A  + D    + V++L    KCP+PD  +GL A
Sbjct:   50 LPLIDLSDI--------HVATLVGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSP--LHDFRKLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAA 224          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 55/182 (30.22%), Postives = 96/182 (52.75%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            P+I+L  ++  G +RA+  + I +ACE+WG F++V+HG+  +++  + +L    +    E++ K  ++   KG       +Q EV   DW    T+F     + + S+ PD  E + EV ++++ +L  +A +LL++L E +GLEK  L  A       +    V     CP+PDL  GL A
Sbjct:    5 PIINLENLN--GDERAKTMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVA--SKG----LEAVQAEVTDLDWES--TFFLRHLPTSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 53/183 (28.96%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  133 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            + PVI++  ++  G  R  +  +I +ACE+WG F++V+HG+  +L+  + +L  E +    E++ K  ++   KG   V + +      DW    T+F       + S   D  E + +V KE++D+L  +A ++L++L E +GLEK  L K        +    V     CP+P+L  GL A
Sbjct:    4 DFPVINMNNLN--GESRVSVLNQINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEMVA--SKGLDSVETEIND---TDWES--TFFLRHLPVSNMSEIGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRA 177          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 55/185 (29.73%), Postives = 95/185 (51.35%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK----DWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            P+I+L  ++  G +R    +KI +ACE+WG F++V+HG+  +++  + +L    +    E++ K  ++  KKG       L+G  V+    DW    T+F     S + S+ PD  + + EV +++  +L  +A +LL++L E +GLEK  L          +    V     CP+PDL  GL A
Sbjct:    5 PIINLEKLN--GAERVATMEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVA--KKG-------LEGVEVEVTDMDWES--TFFLRHLPSSNISQLPDLDDVYREVMRDFRKRLEKLAEELLDLLCENLGLEKSYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 54/182 (29.67%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            P+I+L  ++  G +RA   + I +ACE+WG F++V+HG+  +++  + ++    +    E++ K  ++   KG       +Q EV   DW    T+F     + + S+ PD  E + EV ++++ +L  +A +LL++L E +GLEK  L  A       +    V     CP+PDL  GL A
Sbjct:    5 PIINLEKLN--GDERANTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVA--SKG----LEAVQAEVTDLDWES--TFFLRHLPTSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 54/182 (29.67%), Postives = 92/182 (50.55%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVV-KDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            P+ISL  ++ V  +RA   + I +ACE+WG F++V+HG+  +++  + ++    +    E++ K  ++     G      +Q EV   DW    T+F       + S  PD  E + EV ++++ +L  +A +LL++L E +GLEK  L  A       +    V     CP+PDL  GL A
Sbjct:    5 PIISLDKVNGV--ERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEG------VQAEVTDMDWES--TFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 53/182 (29.12%), Postives = 92/182 (50.55%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSK---CPQPDLTLGLNA 672
            P+I+L  ++  G +RA   +KI +ACE+WG F+ V+HG+  +L+  + ++  E +    EE+ K  +   K  G      L+ EV   DW    T++       + S  PD  + +  + K+++ ++  ++ +LL++L E +GLEK  L K      +      +S    CP PDL  GL A
Sbjct:    5 PIINLEKLN--GEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFKESI---KNRGL---DSLRSEVNDVDWES--TFYLKHLPVSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 49/182 (26.92%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  136 IPVISLAG-IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSR---DY--SRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            +P+I++ G +       AE+ + + EACE  G FQVV+HG+DA+L++D  R    FF +P  EK +     G+  G+  S   +      W+E +++ S P       DY  +   +      EV   Y  ++  ++ +++EVL E++G+ +    +     D  + +     C +P  TLG
Sbjct:   39 VPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLG 220          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 49/177 (27.68%), Postives = 80/177 (45.20%), Query Frame = 1
Query:  136 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPE-EKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            IP I L G+ +    R  +  K+ +A E +G FQ ++HGV   ++  M      F    PE  K+ +     KK  +  ++ L       WR+ ++    P    D  +  D PE   E+  EYS ++M +A  + E+LSEA+GL    L +        ++      CP+P+ T G
Sbjct:   55 IPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLSCVMAP----DVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFG 227          
The following BLAST results are available for this feature:
BLAST of FC930213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACCO_DIACA1.773e-1329.67Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
G3OX2_ARATH2.315e-1328.65Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCO4_SOLLC6.737e-1330.221-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO3_CUCME8.799e-1328.961-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO2_SOLLC1.960e-1229.731-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO1_SOLLC2.560e-1229.671-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO1_PETHY2.560e-1229.671-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO1_ARATH2.560e-1229.121-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
GAO1A_WHEAT3.343e-1226.92Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GSL_ARATH4.367e-1227.68Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005A03EF PostHarvC1 Citrus clementina cDNA clone C34005A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930213 ID=FC930213; Name=FC930213; organism=Citrus clementina; type=EST; length=691bp
TTGTGCTTCGTTGATCATCAATTAATGGCTCCTTCAACCCTCACCGCCCT
TGCTGCGGAGAAAACCCTCAACCCAAGCTTTGTCCGCATTCAAGATGAGC
GTCCCAAGGTGGCTTATAATGAATTCAGCAATGAAATTCCTGTGATTTCA
CTTGCTGGGATCGATGACGTCGGTGGCAAAAGGGCTGAGATTTGCAAGAA
AATTGTTGAGGCGTGTGAGGACTGGGGAATCTTTCAAGTTGTTGATCATG
GTGTTGATGCTAAGCTTATATCCGATATGACTCGTCTTGCTACAGAATTT
TTCGCCCTGCCCCCTGAGGAGAAGCTCAAGTTTGATATGTCCGGTGGGAA
GAAGGGTGGCTTCATTGTCTCCAGCCACCTTCAGGGTGAAGTAGTAAAAG
ATTGGCGTGAAATAGTGACGTATTTTTCATACCCAAAGCAAAGCCGAGAC
TACTCTCGTTGGCCGGACAAGCCAGAAGGGTGGATGGAAGTAACAAAAGA
ATACAGTGACCAATTAATGGGAGTGGCGTGCAAGCTTCTAGAAGTTTTAT
CAGAGGCAATGGGATTGGAGAAGGAAGCTTTGACTAAAGCATGTGTGGAC
ATGGACCAAAAGATTGTTGTCAAATTACTATCCAAATGCCCACAACCCGA
CCTCACTCTCGGACTCAACGCCACACGGATCCGGGAACATC
back to top