FC930213

Overview
NameFC930213
Unique NameFC930213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 56/182 (30.77%), Postives = 90/182 (49.45%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVV-KDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            PVI++  ++  G +RA     I +ACE+WG F++V+HG+  +L+  + R+    +    E++ K  ++     G      +Q EV   DW    TYF       + S  PD  E +  V K+++++L  +A  LL++L E +GLEK  L KA       +    V     CP+ DL  GL A
Sbjct:    5 PVINMEKMN--GEERAATMGLINDACENWGFFELVNHGIPPELMDTVERVTKAHYKKCMEQRFKELVASKALEG------IQAEVTDMDWES--TYFLRHLPQSNISEVPDLDEEYRRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 49/182 (26.92%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  136 IPVISLAG-IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSR---DY--SRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            +P+I + G +       AE+ + + EACE  G FQVV+HG+DA+L++D  R    FF +P  EK +     G+  G+  S   +      W+E +++ S P       DY  +   +      EV   Y  ++  ++ +++EVL E++G+ +    +     D  + +     C +P  TLG
Sbjct:   39 VPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLG 220          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 51/183 (27.87%), Postives = 89/183 (48.63%), Query Frame = 1
Query:  136 IPVISLAGIDDVGGKRA--EICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSR---DY--SRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            +P+I + G+   G  RA  E+ + + EACE  G FQVV+HG+DA+L++D  R    FF +P  EK +     G+  G+  S   +      W+E +++ S P       DY  +   +      EV   Y  ++  ++ +++EVL E++G+ +    +     D  + +     C +P  TLG
Sbjct:   39 VPLIDIGGMLS-GDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLG 220          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 53/191 (27.75%), Postives = 89/191 (46.60%), Query Frame = 1
Query:   97 ERPKVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSH--LQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            +R  V   +   +IPVI+L G+      R EI +KI EA E +G FQ+V+HG+   ++  M     +F     + K ++         F+ SS+  L   +  +WR+ +       Q  D   +PD      ++  +YS+ +  +   L E+LSEA+GL+   L +        ++      CPQP+LT G
Sbjct:   78 DRISVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIMNSNQP-DPQEFPDV---CRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFG 264          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 54/182 (29.67%), Postives = 93/182 (51.10%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVKLLSKCPQPDLTLGLNA 672
            P+I+L  ++  G +R    + I +ACE+WG F++V+HG+  +++  + +L    +    E++ K  ++   KG       +Q EV   DW    T+F       + S  PD  + + EV ++++ +L  +A +LL++L E +GLEK  L KA       +    V     CP+PDL  GL A
Sbjct:    5 PIINLEKLN--GSERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVA--SKG----LEAVQAEVTDLDWES--TFFLRHLPVSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 53/202 (26.24%), Postives = 93/202 (46.04%), Query Frame = 1
Query:   79 FVRIQDERPKVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTY-----FSYPKQSRDY--SRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSKCPQPDLTLG 663
            F+   +E+P +   E +  +P I L+  D       E  + I EAC   G F VV+HGV   LI+D  RL   FF +P   K K     G+  G+  S   +      W+E +++      S  +  +DY       + E + +V ++Y + +  ++ K++E+L  ++G+ ++       + D  + +     C  PDLTLG
Sbjct:   46 FIWPDEEKPSIDIPELN--VPFIDLSSQDST----LEAPRVIAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLG 241          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 52/182 (28.57%), Postives = 93/182 (51.10%), Query Frame = 1
Query:  139 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSK---CPQPDLTLGLNA 672
            P+I+L  ++  G +RA+  + I +ACE+WG F++V+HG+  +++  + ++    +    E++ K  ++   KG       +Q EV   DW    T+F       +    PD  + + EV ++++ +L  +A +LL++L E +GLEK  L K             +S    CP+PDL  GL A
Sbjct:    5 PIINLEKLN--GSERADTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVA--SKG----LEAVQAEVTDLDWES--TFFLRHLPVSNICEVPDLDDQYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRA 176          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 50/189 (26.46%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  127 SNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEK-LKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKA------CVDMDQKIVVKLLSKCPQPDLTLGLNA 672
            ++  PVI++  +   G +R    +++ +ACE+WG F++++HG+  +L+ ++ ++  + +    E++ L+F     K+G       +      DW    T+F       + +  PD  + +  + K ++ +L  +A +LL++L E +GLEK  LTKA            K  V     CP+PDL  GL A
Sbjct:    4 TSTFPVINMELL--AGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEG----CDDVNKAEKLDWES--TFFVRHLPESNIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTK--VSSYPPCPRPDLVKGLRA 182          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 50/189 (26.46%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  127 SNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEK-LKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKA------CVDMDQKIVVKLLSKCPQPDLTLGLNA 672
            ++  PVI++  +   G +R    +++ +ACE+WG F++++HG+  +L+ ++ ++  + +    E++ L+F     K+G       +      DW    T+F       + +  PD  + +  + K ++ +L  +A +LL++L E +GLEK  LTKA            K  V     CP+PDL  GL A
Sbjct:    4 TSTFPVINMELL--AGEERPAAMEQLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEG----CDDVNKAEKLDWES--TFFVRHLPESNIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTK--VSSYPPCPRPDLVEGLRA 182          
BLAST of FC930213 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 54/184 (29.35%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  133 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVKLLSK---CPQPDLTLGLNA 672
            + PV+ L+ +  +G +R +    I +ACE+WG F++V+HG+   L+ +  ++  E + +  E+K   DM   K        +L+ EV   DW E   Y  +  QS  Y   PD  + +    K++  +L  +A  LL++L E +GLEK  L K             +S    CP+P++  GL A
Sbjct:    6 KFPVVDLSKL--IGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFN-DMLKSKG-----LENLEREVEDVDW-ESTFYLRHLPQSNLYD-IPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRA 179          
The following BLAST results are available for this feature:
BLAST of FC930213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACCO_DIOKA4.367e-1230.771-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
GAO1D_WHEAT7.448e-1226.92Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1B_WHEAT9.728e-1227.87Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
DV4H_CATRO1.271e-1127.75Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCO3_PETHY1.271e-1129.671-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
GAOX2_ARATH1.659e-1126.24Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
ACCO_TOBAC2.167e-1128.571-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO1_ORYSI2.167e-1126.461-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ2.830e-1126.461-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_BRAJU2.830e-1129.351-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionC34005A03EF PostHarvC1 Citrus clementina cDNA clone C34005A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930213 ID=FC930213; Name=FC930213; organism=Citrus clementina; type=EST; length=691bp
TTGTGCTTCGTTGATCATCAATTAATGGCTCCTTCAACCCTCACCGCCCT
TGCTGCGGAGAAAACCCTCAACCCAAGCTTTGTCCGCATTCAAGATGAGC
GTCCCAAGGTGGCTTATAATGAATTCAGCAATGAAATTCCTGTGATTTCA
CTTGCTGGGATCGATGACGTCGGTGGCAAAAGGGCTGAGATTTGCAAGAA
AATTGTTGAGGCGTGTGAGGACTGGGGAATCTTTCAAGTTGTTGATCATG
GTGTTGATGCTAAGCTTATATCCGATATGACTCGTCTTGCTACAGAATTT
TTCGCCCTGCCCCCTGAGGAGAAGCTCAAGTTTGATATGTCCGGTGGGAA
GAAGGGTGGCTTCATTGTCTCCAGCCACCTTCAGGGTGAAGTAGTAAAAG
ATTGGCGTGAAATAGTGACGTATTTTTCATACCCAAAGCAAAGCCGAGAC
TACTCTCGTTGGCCGGACAAGCCAGAAGGGTGGATGGAAGTAACAAAAGA
ATACAGTGACCAATTAATGGGAGTGGCGTGCAAGCTTCTAGAAGTTTTAT
CAGAGGCAATGGGATTGGAGAAGGAAGCTTTGACTAAAGCATGTGTGGAC
ATGGACCAAAAGATTGTTGTCAAATTACTATCCAAATGCCCACAACCCGA
CCTCACTCTCGGACTCAACGCCACACGGATCCGGGAACATC
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