FC930219

Overview
NameFC930219
Unique NameFC930219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930219_ssr121 microsatellite FC930219_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:44..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.274e-59
Identity = 91/152 (59.87%), Postives = 105/152 (69.08%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G         +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y++ QCLGA+CG G VK FQ+  Y   GGGAN +A GYT+
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSK------STSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTK 177          

HSP 2 Score: 65.855 bits (159), Expect = 6.274e-59
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVP 211          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.275e-59
Identity = 96/179 (53.63%), Postives = 111/179 (62.01%), Query Frame = 1
Query:   64 QNKNKREKMGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            +NK +  K+G +             + KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G K       +   C  VGI G+AWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YMV QCLGAICG G VK F    Y R GGGAN +  GYT+
Sbjct:    3 ENKEEDVKLGANKFRETQPLGTAAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKR------SDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTK 175          

HSP 2 Score: 66.6254 bits (161), Expect = 6.275e-59
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP
Sbjct:  175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVP 209          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.179e-59
Identity = 91/152 (59.87%), Postives = 105/152 (69.08%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G         +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y++ QCLGAICG G VK FQ+  Y   GGGAN +A GYT+
Sbjct:   35 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSK------STSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTK 180          

HSP 2 Score: 65.855 bits (159), Expect = 8.179e-59
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP
Sbjct:  180 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVP 214          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.390e-58
Identity = 91/152 (59.87%), Postives = 105/152 (69.08%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G         ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ+  Y   GGGAN +A GYT+
Sbjct:   32 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSK------SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTK 177          

HSP 2 Score: 65.855 bits (159), Expect = 1.390e-58
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP
Sbjct:  177 KGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVP 211          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 2.364e-58
Identity = 90/152 (59.21%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            KDY +PP AP+ + EEL  WSFYRA IAEF+A            +G       N +  +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YM  QCLGAICG G VK FQ+  Y   GGGAN +  GYT+
Sbjct:   31 KDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGV------NKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTK 176          

HSP 2 Score: 66.2402 bits (160), Expect = 2.364e-58
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAEI+GTFVLVYTVFSATD KR+ARDSHVP
Sbjct:  176 KGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVP 210          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.572e-57
Identity = 87/152 (57.24%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            +DY +PP APL +  EL  WSFYRA IAEF+A            +G         +  +CG VGI GIAWAFGGMIF LVYCTAG+SGGHINPAVTFGL L RK+SL RA+ Y+V QCLGA+CG G VKAF  + Y   GGGAN ++ GYT+
Sbjct:   37 RDYSEPPAAPLFEASELSSWSFYRAGIAEFVATFLFLYVTVLTVMGVSK------SPSKCGTVGIQGIAWAFGGMIFALVYCTAGVSGGHINPAVTFGLLLARKLSLTRAVYYVVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTK 182          

HSP 2 Score: 65.855 bits (159), Expect = 2.572e-57
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAE++GTFVLVYTVFSATD KR+ARDSHVP
Sbjct:  182 KGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVP 216          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.435e-57
Identity = 90/152 (59.21%), Postives = 105/152 (69.08%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQ-KSYYNRYGGGANELADGYT 597
            KDY DPPPAPL+D  ELG+WS YRA IAEF A            IG K Q+         GG G+LGIAWAFGG+IF+LVYCTAGISGGH+NPAVTF + L R+VSL RA LY +AQC+GA+CG G  +A      Y R+GGGANELA GY+
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGE-------GGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYS 156          

HSP 2 Score: 61.6178 bits (148), Expect = 7.435e-57
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 3
Query:  600 GTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            G G+ AE++GTFVLVYTVFSATDPKR ARDSHVP
Sbjct:  158 GAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVP 191          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 3.649e-56
Identity = 91/153 (59.48%), Postives = 103/153 (67.32%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQ-KSYYNRYGGGANELADGYTR 600
            KDY +PPPAPL +  EL  WSFYRA IAEFIA            +G   ++       +C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YMV Q LGAICG G VK F+ K  +    GGAN +A GYT+
Sbjct:   32 KDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRESS------KCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTK 178          

HSP 2 Score: 67.0106 bits (162), Expect = 3.649e-56
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAEI+GTF+LVYTVFSATD KRSARDSHVP
Sbjct:  178 KGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVP 212          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.762e-53
Identity = 86/152 (56.58%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            KDY +PPPAPL +  EL  WSFYR  IAEF+A            +G         +T +C  VGI GIAW+FGGMI  LVYCTAGISG HINPAVTFGLFL RK+SL RA+ Y++ QCLGAICG G VK FQ+  Y   GG  N +A GYT+
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRPGIAEFVATFLFLYISILTVMGVSK------STSKCATVGIQGIAWSFGGMILALVYCTAGISG-HINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTK 175          

HSP 2 Score: 65.0846 bits (157), Expect = 2.762e-53
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 3
Query:  597 KGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            KG GLGAEI+GTF+LVYTVFSATD KR ARDSHVP
Sbjct:  175 KGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVP 209          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.535e-47
Identity = 96/152 (63.16%), Postives = 106/152 (69.74%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 600
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G       N +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL YMV QCLGAICG G VK FQK  Y   GGGAN +A GYT+
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV------NNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTK 176          
The following BLAST results are available for this feature:
BLAST of FC930219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PIP12_MAIZE6.274e-5959.87Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP1_SOLLC6.275e-5953.63Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_MAIZE8.179e-5959.87Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_ORYSJ1.390e-5859.87Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_ORYSJ2.364e-5859.21Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE2.572e-5757.24Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ7.435e-5759.21Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP2_PEA3.649e-5659.48Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP11_MAIZE2.762e-5356.58Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP12_ORYSJ2.535e-4763.16Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC34005A09EF PostHarvC1 Citrus clementina cDNA clone C34005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930219 ID=FC930219; Name=FC930219; organism=Citrus clementina; type=EST; length=702bp
CATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCTCCCT
CTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATG
TTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGAC
TACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAG
GTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGT
TTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGAT
CCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGC
TTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTA
TTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGG
CGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTT
GGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACT
ACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACACAAGG
GCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACT
GTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCCCATGTTCC
GG
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