FC930219

Overview
NameFC930219
Unique NameFC930219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.058e-14
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGY-KSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            RA +AEFI+            I Y K  +D  L+T      G++ IA   G  +F+ V   A ISGGH+NPAVTFGL +G ++++I  + Y +AQ LG+   C  +K
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTP-----GLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK 120

HSP 2 Score: 30.0314 bits (66), Expect = 2.058e-14
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            G+  EII TF LVYTV+ +A DPK+ +  +  P
Sbjct:  142 GVVMEIIITFALVYTVYATAADPKKGSLGTIAP 174
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.473e-14
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            EL      +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++AL+Y VAQ LG++  C  +K
Sbjct:   13 ELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATP----AGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLK 122

HSP 2 Score: 25.409 bits (54), Expect = 3.473e-14
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:  618 EIIGTFVLVYTVF-SATDPKR 677
            E++ TF LVYTV+ +A DPK+
Sbjct:  148 EMVMTFGLVYTVYATAVDPKK 168
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.473e-14
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            EL      +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++A++Y VAQ LG++  C  +K
Sbjct:   13 ELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPS----GLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK 122

HSP 2 Score: 26.5646 bits (57), Expect = 3.473e-14
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:  618 EIIGTFVLVYTVF-SATDPKR 677
            EI+ TF LVYTV+ +A DPK+
Sbjct:  148 EIVMTFGLVYTVYATAVDPKK 168
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.670e-13
Identity = 39/114 (34.21%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            E  R    RA  AEF +            + Y   T     T      G++  + +    +F+ V   A +SGGH+NPAVTFG F+G  ++L+RA+LY +AQ LGA+  C  +K
Sbjct:   13 EASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATP----AGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK 122

HSP 2 Score: 26.5646 bits (57), Expect = 1.670e-13
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:  618 EIIGTFVLVYTVF-SATDPKR 677
            EI+ TF LVYTV+ +A DPK+
Sbjct:  148 EIVMTFGLVYTVYATAVDPKK 168
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.671e-13
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            +A +AEFIA            I Y   T    N       G++ IA A    +F+ V   A ISGGH+NPAVTFGL +G  ++++  L Y +AQ LGA   C  +K
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLK 120

HSP 2 Score: 29.6462 bits (65), Expect = 1.671e-13
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            G+  EI+ TF LVYTV+ +A DPK+ +  +  P
Sbjct:  141 GVVMEIVITFALVYTVYATAADPKKGSLGTIAP 173
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.170e-13
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            +A +AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A +SGGH+NPAVT GL +G  ++++  L Y +AQCLG+   C  +K
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDP-----AGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK 120

HSP 2 Score: 29.261 bits (64), Expect = 2.170e-13
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSA 683
            G+  EII TF LVYTV+ +A DPK+ +
Sbjct:  142 GVVMEIIITFALVYTVYATAADPKKGS 168
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.819e-13
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 1 
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 519
            +A +AEFI+            + +   T     T      G++  A A    +F+ V   A ISGGH+NPAVTFG F+G  ++L R LLY +AQ LG+   C
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTP----AGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVAC 118

HSP 2 Score: 27.7202 bits (60), Expect = 2.819e-13
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 3 
Query:  618 EIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            EI+ TF LVYTV+ +A DPK+ +  +  P
Sbjct:  147 EIVMTFGLVYTVYATAVDPKKGSLGTIAP 175
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.819e-13
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAI 510
            +A +AEFI+            I Y   T+    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  ++L+R ++Y++AQ LG+I
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSI 115

HSP 2 Score: 28.4906 bits (62), Expect = 2.819e-13
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 3 
Query:  600 GTGLGAEIIGTFVLVYTVF-SATDPKR 677
            G  L  EI+ TF LVYTV+ +A DPK+
Sbjct:  141 GPALVLEIVMTFGLVYTVYATAVDPKK 167
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.819e-13
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:  205 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 519
            S  +A ++EFIA            + +   T            G++ IA A    +F+ V   A ISGGH+NPAVT GL +G  ++LI    Y +AQCLG+I  C
Sbjct:   16 SSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGA----LDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVAC 116

HSP 2 Score: 30.0314 bits (66), Expect = 2.819e-13
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            G+  EI+ TF LVYTV+ +A DPK+ +  +  P
Sbjct:  142 GVVMEIVVTFALVYTVYATAADPKKGSLGTIAP 174
[Close]
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.820e-13
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-----DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 531
            +A +AEFI+            I Y   T     DP          G++ +A   G  +F+ V   A ISGGH+NPAVTFGL LG +++++  + Y +AQ LGAI G   V+
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDP---------AGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQ 121

HSP 2 Score: 29.261 bits (64), Expect = 2.820e-13
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:  606 GLGAEIIGTFVLVYTVF-SATDPKRSARDSHVP 701
            G+  EII TF LVYTV+ +A DPK+ +  +  P
Sbjct:  141 GVVMEIIVTFGLVYTVYATAADPKKGSLGTIAP 173
The following BLAST results are available for this feature:
BLAST of FC930219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
TIP21_ARATH2.058e-1438.32Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP12_MAIZE3.473e-1435.96Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP12_ORYSJ3.473e-1435.09Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH1.670e-1334.21Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP21_ORYSJ1.671e-1337.74Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP_ANTMA2.170e-1335.51Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP11_ORYSJ2.819e-1336.27Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR2.819e-1336.36Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP23_ARATH2.819e-1335.24Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP22_ORYSJ2.820e-1336.04Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC34005A09EF PostHarvC1 Citrus clementina cDNA clone C34005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930219 ID=FC930219; Name=FC930219; organism=Citrus clementina; type=EST; length=702bp
CATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCTCCCT
CTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATG
TTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGAC
TACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAG
GTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGT
TTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGAT
CCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGC
TTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTA
TTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGG
CGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTT
GGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACT
ACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACACAAGG
GCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACT
GTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCCCATGTTCC
GG
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