FC930219

Overview
NameFC930219
Unique NameFC930219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 516
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ Y+VAQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAG 100          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 516
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ YM AQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAG 100          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 516
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAG 100          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  175 LIDFEELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 528
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ +++ Y+ AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQTFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 2.396e-11
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  214 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAI 510
            +A +AEFI+            I Y   T+    T      G++  + A    +F+ V   A ISGGH+NPAV FG F+G  ++L+R ++Y++AQ LG+I
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSI 114          

HSP 2 Score: 28.4906 bits (62), Expect = 2.396e-11
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  600 GTGLGAEIIGTFVLVYTVF-SATDPKR 677
            G  L  EI+ TF LVYTV+ +A DPK+
Sbjct:  140 GPALVLEIVMTFGLVYTVYATAVDPKK 166          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 516
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAP-------GPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAG 100          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICG 516
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAG 100          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 6.788e-11
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  214 RAVIAEFIAXXXXXXXXXXXXIG-YKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAI 510
            RA ++EF+A             G +K   D    T   GG+ ++ +A A    +   V  +   SGGH+NPAVTFG+ +GR++S  RA LY  AQ LGA+
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRD----TGTLGGLLVVAVAHALA--LAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAV 122          

HSP 2 Score: 27.7202 bits (60), Expect = 6.788e-11
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  591 IHKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVP 701
            IH+   L  E++ TF LVYTV++    +RS      P
Sbjct:  146 IHERHALLLEVVMTFGLVYTVYATAVDRRSGGGDIAP 182          
BLAST of FC930219 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  190 ELGRWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG 522
            EL   SF+RA++AEF+             +G   +  P       G  G+LG A AFG     LV     +SGGHINPA+T    L  ++SL RAL Y++AQ LGA+ G G
Sbjct:    3 ELRSSSFWRAILAEFLGSLLYTLLG----LGASLRWAP-------GPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAG 102          
The following BLAST results are available for this feature:
BLAST of FC930219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
MIP_SHEEP1.716e-1139.45Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RABIT1.716e-1139.45Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_CANFA2.241e-1139.45Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP4_BOVIN2.241e-1133.90Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP1_MEDSA2.396e-1135.35Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
MIP_HUMAN2.927e-1139.45Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CAVPO4.993e-1139.45Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP32_ORYSJ6.788e-1137.00Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
MIP_CHICK8.517e-1139.64Lens fiber major intrinsic protein OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionC34005A09EF PostHarvC1 Citrus clementina cDNA clone C34005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930219 ID=FC930219; Name=FC930219; organism=Citrus clementina; type=EST; length=702bp
CATCATTAAACTCTGTAGCAACACAACAGTCGTAGCTCTTGTTTCTCCCT
CTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATG
TTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGAC
TACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAG
GTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGT
TTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGAT
CCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGC
TTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTA
TTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGG
CGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTT
GGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACT
ACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACACAAGG
GCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACT
GTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCCCATGTTCC
GG
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