FC930221

Overview
NameFC930221
Unique NameFC930221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:1..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  310 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            VIP+    T+  +   D+ S L K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+G
Sbjct:    3 VIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCLG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_CAMHC (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV L       V   ++A+ L+L+ ED +K IYLYINS G        G  T  F+IYD M Y+KP + T+C+G
Sbjct:   18 DIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPG--------GVVTSGFSIYDTMNYIKPAVSTICIG 93          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP1_LEPIC (ATP-dependent Clp protease proteolytic subunit 1 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpP1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  310 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            VIP+    T+  +   D+ S L K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+G
Sbjct:    3 VIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCLG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CVG
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVG 103          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CVG
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVG 103          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CVG
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICVG 103          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_HALOH (ATP-dependent Clp protease proteolytic subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG      ++ LI+A+ L+L+ ED +K I+LYINS G        G  T A A+YD + Y+KP + T+C+G
Sbjct:   19 DIYSRLLKDRIVFLGHPINDELSNLIIAQLLFLEAEDPDKDIHLYINSPG--------GSVTAALAMYDTIQYIKPDVATICMG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_ANADF (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG      V  +++A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+G
Sbjct:   21 DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICLG 96          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  295 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            P+ T  +P+    +  +   D+ + L   RI++LG      V   ++A+ LYL  ED+ KPIYLYINS G        G  T   AIYD M YVK  + T+CVG
Sbjct:    2 PIGTPSVPYRLPGSQFERWVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPG--------GSVTAGLAIYDTMKYVKSDVVTICVG 97          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP2_BACHD (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus halodurans GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV+LG +    +   I+A+ L+L+ E+ +K IYLYINS G        G  +  FAIYD M +VKP I T+C G
Sbjct:   20 DIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLYINSPG--------GSTSAGFAIYDTMQFVKPSIHTICTG 95          
The following BLAST results are available for this feature:
BLAST of FC930221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
CLPP_LEPIN8.767e-1239.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMHC8.767e-1242.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_LEPIC8.767e-1239.00ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THESQ1.145e-1144.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP11.145e-1144.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA1.145e-1144.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HALOH1.145e-1142.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADF1.145e-1144.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMA1.145e-1138.46ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACHD1.145e-1144.05ATP-dependent Clp protease proteolytic subunit 2 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005B01EF PostHarvC1 Citrus clementina cDNA clone C34005B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930221 ID=FC930221; Name=FC930221; organism=Citrus clementina; type=EST; length=653bp
TCGCCGGGGACAGTTTGCTAATTGCTAATCCTCAGCCTTTTCACTCTTGC
TCTCCAACAACTCCGCTACCAAATGGAAGTAGCCACCGCATCAGCGCCGA
TCTTCGGGCTCCGCACGCGCATGTTAGCAACACCACCACGCACCTCTCCA
CGAACCGTAAATTGTAACCGAAACCTATCCACCAGCTTCATCTCTCCATT
CGCAAACGGCAGCGTTTCCTCCGACTTCTCCGGGCTCAGGCTCCGACCCG
ATTGCCTCAATCCGGATTCATTCTGCAAGTCCAAGCCTAGGAGCCCCGTC
ATCACCATGGTCATTCCTTTTACTAGTGGAACTGCATGGGAGCAACCTCC
ACCAGACTTGGCATCTTATTTGTACAAGAATCGAATTGTTTACTTGGGCA
TGTCTTTTGTTCCTTCTGTCACAGAGCTGATTCTTGCTGAGTTCCTTTAC
CTGCAGTATGAAGATGCTGAGAAGCCCATTTACTTATACATAAACTCTAC
GGGAACAACCAAGGGTGGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTG
CGATATATGATGTTATGGGTTATGTCAAGCCGCCTATATTTACTCTTTGT
GTCGGCAATGCTTGGGGTGAGGCAGCGCTTCTCTTGGGTGCCGGTGCCAA
GGA
back to top