FC930221

Overview
NameFC930221
Unique NameFC930221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:1..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP1_BACHK (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus thuringiensis subsp. konkukian GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV +G      V   ++A+ L+L+ EDAEK I+LYINS G        G  T  FAI D M  +KP + TLC+G
Sbjct:   19 DIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPG--------GSTTAGFAILDTMNLIKPDVQTLCMG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP1_BACHD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus halodurans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI+ LG +   +V   I+A+ L+LQ ED +K I LYINS G        G  T   AIYD M Y+KP + T+C+G
Sbjct:   19 DIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPG--------GSITAGMAIYDTMQYIKPNVSTICIG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP1_BACAN (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus anthracis GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RIV +G      V   ++A+ L+L+ EDAEK I+LYINS G        G  T  FAI D M  +KP + TLC+G
Sbjct:   19 DIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPG--------GSTTAGFAILDTMNLIKPDVQTLCMG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_NITSB (ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp. (strain SB155-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI+ L      +V   I+A+ L+L+ ED +K IYLYINS G        G  T   +IYD M Y+KP + T+C+G
Sbjct:   20 DIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPG--------GVITSGMSIYDTMNYIKPDVSTICIG 95          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_HAMD5 (ATP-dependent Clp protease proteolytic subunit OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  268 SFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            SF +   R P +T+V      T+  +   D+ S + K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G  T   +IYD M ++ P + T+C+G
Sbjct:    3 SFDEQNTRLPSMTLVPMVVEQTSRGERAYDIYSRMLKERVIFLTGQVEEHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFITPDVSTICIG 107          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP2_DESHY (ATP-dependent Clp protease proteolytic subunit 2 OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI++LG      V  L++A+ L+L+ ED EK I+LYINS G        G  +   AIYD M Y++  + T+CVG
Sbjct:   20 DIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPG--------GSISAGMAIYDTMQYIRADVHTICVG 95          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP1_BACCZ (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus cereus (strain ZK / E33L) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI+ +G      V   ++A+ L+L+ EDAEK I+LYINS G        G  T  FAI D M  +KP + TLC+G
Sbjct:   19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPG--------GSTTAGFAILDTMNLIKPDVQTLCMG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_SULDN (ATP-dependent Clp protease proteolytic subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI+ L      +V   I+A+ L+L+ ED EK IY YINS G        G  T   AIYD M Y++P + T+CVG
Sbjct:   19 DIYSRLLKDRIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDIYFYINSPG--------GVVTAGMAIYDTMNYIRPDVATICVG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP2_BACSK (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus clausii (strain KSM-K16) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI+ LG     +V   I+A+ L+LQ ED EK I LYINS G        G  T   AIYD M ++KP + T+C+G
Sbjct:   19 DIYSRLLKDRIIMLGSGVDDNVANSIVAQMLFLQAEDPEKDISLYINSPG--------GSITAGMAIYDTMQFIKPDVSTICIG 94          
BLAST of FC930221 vs. ExPASy Swiss-Prot
Match: CLPP_DESAA (ATP-dependent Clp protease proteolytic subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  355 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG 606
            D+ S L K+RI++LG      V   I+A+ L+L+ +D EK I  YINS G        G  T   AIYD M Y+KP I T+C+G
Sbjct:   19 DIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPG--------GSVTAGMAIYDTMAYIKPEITTVCIG 94          
The following BLAST results are available for this feature:
BLAST of FC930221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
CLPP1_BACHK3.331e-1144.05ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BACHD3.331e-1144.05ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BACAN3.331e-1144.05ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_NITSB4.351e-1141.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAMD54.351e-1133.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_DESHY4.351e-1141.67ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_BACCZ4.351e-1142.86ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SULDN5.682e-1142.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_BACSK5.682e-1144.05ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_DESAA7.422e-1142.86ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005B01EF PostHarvC1 Citrus clementina cDNA clone C34005B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930221 ID=FC930221; Name=FC930221; organism=Citrus clementina; type=EST; length=653bp
TCGCCGGGGACAGTTTGCTAATTGCTAATCCTCAGCCTTTTCACTCTTGC
TCTCCAACAACTCCGCTACCAAATGGAAGTAGCCACCGCATCAGCGCCGA
TCTTCGGGCTCCGCACGCGCATGTTAGCAACACCACCACGCACCTCTCCA
CGAACCGTAAATTGTAACCGAAACCTATCCACCAGCTTCATCTCTCCATT
CGCAAACGGCAGCGTTTCCTCCGACTTCTCCGGGCTCAGGCTCCGACCCG
ATTGCCTCAATCCGGATTCATTCTGCAAGTCCAAGCCTAGGAGCCCCGTC
ATCACCATGGTCATTCCTTTTACTAGTGGAACTGCATGGGAGCAACCTCC
ACCAGACTTGGCATCTTATTTGTACAAGAATCGAATTGTTTACTTGGGCA
TGTCTTTTGTTCCTTCTGTCACAGAGCTGATTCTTGCTGAGTTCCTTTAC
CTGCAGTATGAAGATGCTGAGAAGCCCATTTACTTATACATAAACTCTAC
GGGAACAACCAAGGGTGGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTG
CGATATATGATGTTATGGGTTATGTCAAGCCGCCTATATTTACTCTTTGT
GTCGGCAATGCTTGGGGTGAGGCAGCGCTTCTCTTGGGTGCCGGTGCCAA
GGA
back to top