FC930223

Overview
NameFC930223
Unique NameFC930223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 89/141 (63.12%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS F++H  HRKG A+ R++ F+E +GY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELFIAAEG++T QFVYC KKA L  GNVLPV ++PEG +VC +E   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 89/141 (63.12%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS FK+H  HRKG A+ R + F+E +GY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELFIAAEG++T QF+YC KKA L  GNVLPV ++PEG +VC +E   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 9.335e-47
Identity = 89/141 (63.12%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIR QR GAGS F++H  HRKG A+ R++ F+E +GY+KG+V  II DPGRGAPL +V FR P+R+ K+ ELFIAAEG++T QFVYC KKA L  GNVLPV ++PEG +VC +E   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.080e-46
Identity = 90/141 (63.83%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIRAQR GAGS F SHT  RKG  + RSL ++E +GY+KGVV  II DPGRGAPL  V FR P+++  + ELFIA EG+YT QFVYC KKATL  GNV+PV ++PEG +VCN+E  +GDRG LARASG +A +I HNPD
Sbjct:    2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.080e-46
Identity = 90/141 (63.83%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIRAQR GAGS F SHT  RKG  + RSL ++E +GY+KGVV  II DPGRGAPL  V FR P+++  + ELFIA EG+YT QFVYC KKATL  GNV+PV ++PEG +VCN+E  +GDRG LARASG +A +I HNPD
Sbjct:    2 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPD 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 4.633e-46
Identity = 88/141 (62.41%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIRAQR GAGS FK+H  HRKG A+ R + F+E +GY+KG+V  II DPGRG PL +V FR P+R+ K+ ELFIAAEG++T QFV+C KKA L  GNVLPV  +PEG ++C +E   GDRG LARASG YA +ISHNP+
Sbjct:    2 GRVIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPE 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 4.633e-46
Identity = 89/141 (63.12%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIRAQR GAGS F++HT  RKG  + R L ++E +GYLKGVV QII DPGRGAPL  V FR P+R+    +LFIAAEGMYT QFVYC ++A L  GNVLP+  +PEG +VCN+E   GDRG LAR SG YA +I+HNPD
Sbjct:    2 GRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPD 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.348e-45
Identity = 88/141 (62.41%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIRAQR GAGS FK+H   RKG A+ RSL F+E +GY++GVV  II DPGRGAPL  V FR P+RY  + ELFIA EGM+T QFVYC +KATL  GNV+P+  +PEG ++CN+E   GDRG LAR SG YA +I+HN D
Sbjct:    2 GRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQD 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.141e-44
Identity = 87/141 (61.70%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GRVIRAQR G GS F +HT  RKG  + R+L ++E +GYLKG V QII DPGRGAPL  V FR P+++  + +LFIAAEGMYT QFVYC K+A L  GNVLP+  +PEG +VCN+E   GDRG LAR SG YA +I+HNPD
Sbjct:    2 GRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPD 142          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.794e-43
Identity = 84/143 (58.74%), Postives = 107/143 (74.83%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429
            GRVIR QR GAGS F SHT  R+G A+ R+L ++E +GY++GVV QI+ D GRGAPL +V FR P++Y  + E+FIA EG++T QF+Y  KKA+L  GNVLP+ S+PEG +V NVE   GDRG LARASG Y +II HNPD +
Sbjct:    2 GRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDEN 144          
The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL8_HUMAN9.335e-4763.1260S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_DANRE9.335e-4763.1260S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_BOVIN9.335e-4763.1260S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_SPOFR2.080e-4663.8360S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR2.080e-4663.8360S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_ICTPU4.633e-4662.4160S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_ANOGA4.633e-4663.1260S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_DROME1.348e-4562.4160S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_AEDAL1.141e-4461.7060S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL2_CANGA4.794e-4358.7460S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005B03EF PostHarvC1 Citrus clementina cDNA clone C34005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bp
GGTCGTGTGATTCGCGCACAGCGTATGGGTGCAGGTTCGGGCTTCAAGTC
CCACACCCACCACCGGAAGGGTCCGGCCCAGTTCCGCAGCCTCTACTTCA
GTGAGGGTAATGGTTACCTCAAGGGTGTCGTCGCACAAATTATTCTCGAT
CCGGGTCGTGGTGCCCCGCTGGACCAAGTCACCTTTCGTCACCCTTTTCG
CTACATGAAACAAAATGAGCTTTTCATTGCCGCTGAGGGTATGTACACCG
ATCAGTTCGTGTACTGCGCTAAGAAAGCCACTCTGATGGGTGGTAATGTG
CTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGAGTTTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACC
back to top