FC930223
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.076e-18 Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + +Q G G+ ++S TH RKG ++RS E +G + G V I+ DPGR AP+ +V F + + L + EG+ + + C A + GNVLP+ IPEG V N+E GD G L R+ G YA +ISH+ Sbjct: 2 GKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.076e-18 Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + +Q G G+ ++S TH RKG ++RS E +G + G V I+ DPGR AP+ +V F + + L + EG+ + + C A + GNVLP+ IPEG V N+E GD G L R+ G YA ++SH+ Sbjct: 2 GKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18 Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + +Q G G+ ++S +H RKG ++RS E +G + G V I+ DPGR AP+ +V F + + L + EG+ + + C A + GNVLP+ IPEG V N+E GD G L R+ G YA ++SH+ Sbjct: 2 GKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18 Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 1 GRVIRAQRMGAGS-GFKSHTHHRKGPAQFRSLYFSEG-NGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 G+ I QR G G F+S H + PA+ Y +G + ++GV+ +I+ +PGR P+ V + Q +I EG+Y Q + K A + GNVLP+ IP+G++VCNVE GD G +AR SG YA++ SH D Sbjct: 2 GKRILVQRRGRGGIQFRSKDHLKIAPAR----YPQDGMDNLMRGVIKEILHEPGRHTPISLVELENG-----QEFYYIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSHEGD 135
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.189e-17 Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 G+ + QR G GS F+S +H +G ++ L +++ L+GVV +I+ DPGR AP+ +V F + +L IA EG+ Q +Y A + GN LP+ IPEG V N+E GD G RA G YA+++S D Sbjct: 2 GKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKT-LRGVVEEIMHDPGRTAPVARVRFENGME-----KLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREKD 137
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.553e-17 Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVII 408 G+ I QRMG G+ F+S +H R GPA++ L +KG + ++ DPGR PL ++ ++ A EGMY Q + A + GN+LP+ IPEG + N+E GD G R+SG YA+I+ Sbjct: 2 GKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTFLTP-----AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIV 130
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.460e-17 Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + +Q G G+ ++S +H RKG ++RS E G + G V ++ DPGR AP+ +V F + + L + EG+ + + C A + GNVLP+ IPEG V N+E GD G L RA G YA +++H+ Sbjct: 2 GKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.460e-17 Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + +Q G G+ ++S +H RKG ++RS E G + G V ++ DPGR AP+ +V F + + L + EG+ + + C A + GNVLP+ IPEG V N+E GD G L RA G YA +++H+ Sbjct: 2 GKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17 Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 G+ + QR G GS F+S +H +G ++ L +++ ++GVV +I+ DPGR AP+ +V F + +L IA EG+ Q +Y A + GN LP+ IPEG + N+E GD G RA G YA+++S D Sbjct: 2 GKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKT-IRGVVEEIMHDPGRTAPVARVKFENGME-----KLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSREKD 137
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17 Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + +QR G GS + +H R+G A++R E G + G + I+ DPGR AP+ +V + + L + EG+ + C A + GN+LP+ +IPEG V N+E GD G L RA G YA I++H+ Sbjct: 2 GKRLISQRRGRGSSVYTCPSHKRRGEAKYRRFDELEKKGKVLGKIVDILHDPGRSAPVAKVEYE-----TGEEGLLVVPEGVKVGDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTHD 136 The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bpback to top |