FC930223

Overview
NameFC930223
Unique NameFC930223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.076e-18
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ + +Q  G G+  ++S TH RKG  ++RS    E +G + G V  I+ DPGR AP+ +V F +      +  L +  EG+   + + C   A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH+
Sbjct:    2 GKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.076e-18
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ + +Q  G G+  ++S TH RKG  ++RS    E +G + G V  I+ DPGR AP+ +V F +      +  L +  EG+   + + C   A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH+
Sbjct:    2 GKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18
Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ + +Q  G G+  ++S +H RKG  ++RS    E +G + G V  I+ DPGR AP+ +V F +      +  L +  EG+   + + C   A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH+
Sbjct:    2 GKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    1 GRVIRAQRMGAGS-GFKSHTHHRKGPAQFRSLYFSEG-NGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ I  QR G G   F+S  H +  PA+    Y  +G +  ++GV+ +I+ +PGR  P+  V   +      Q   +I  EG+Y  Q +   K A +  GNVLP+  IP+G++VCNVE   GD G +AR SG YA++ SH  D
Sbjct:    2 GKRILVQRRGRGGIQFRSKDHLKIAPAR----YPQDGMDNLMRGVIKEILHEPGRHTPISLVELENG-----QEFYYIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSHEGD 135          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.189e-17
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +H  +G  ++  L +++    L+GVV +I+ DPGR AP+ +V F +        +L IA EG+   Q +Y    A +  GN LP+  IPEG  V N+E   GD G   RA G YA+++S   D
Sbjct:    2 GKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKT-LRGVVEEIMHDPGRTAPVARVRFENGME-----KLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREKD 137          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.553e-17
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVII 408
            G+ I  QRMG G+  F+S +H R GPA++  L        +KG +  ++ DPGR  PL ++       ++       A EGMY  Q +     A +  GN+LP+  IPEG  + N+E   GD G   R+SG YA+I+
Sbjct:    2 GKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTFLTP-----AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIV 130          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.460e-17
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ + +Q  G G+  ++S +H RKG  ++RS    E  G + G V  ++ DPGR AP+ +V F +      +  L +  EG+   + + C   A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H+
Sbjct:    2 GKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.460e-17
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ + +Q  G G+  ++S +H RKG  ++RS    E  G + G V  ++ DPGR AP+ +V F +      +  L +  EG+   + + C   A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H+
Sbjct:    2 GKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +H  +G  ++  L +++    ++GVV +I+ DPGR AP+ +V F +        +L IA EG+   Q +Y    A +  GN LP+  IPEG  + N+E   GD G   RA G YA+++S   D
Sbjct:    2 GKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKT-IRGVVEEIMHDPGRTAPVARVKFENGME-----KLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSREKD 137          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.519e-17
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ + +QR G GS  +   +H R+G A++R     E  G + G +  I+ DPGR AP+ +V +        +  L +  EG+     + C   A +  GN+LP+ +IPEG  V N+E   GD G L RA G YA I++H+
Sbjct:    2 GKRLISQRRGRGSSVYTCPSHKRRGEAKYRRFDELEKKGKVLGKIVDILHDPGRSAPVAKVEYE-----TGEEGLLVVPEGVKVGDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTHD 136          
The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL2_METMP1.076e-1837.8650S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM71.076e-1837.1450S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM63.129e-1836.4350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_KORCO3.129e-1837.7650S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_PYRAB1.189e-1737.3250S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_STAMF1.553e-1735.7750S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_METVS3.460e-1735.7150S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA3.460e-1735.7150S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_PYRHO4.519e-1735.9250S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_METJA4.519e-1735.0050S ribosomal protein L2P OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionC34005B03EF PostHarvC1 Citrus clementina cDNA clone C34005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bp
GGTCGTGTGATTCGCGCACAGCGTATGGGTGCAGGTTCGGGCTTCAAGTC
CCACACCCACCACCGGAAGGGTCCGGCCCAGTTCCGCAGCCTCTACTTCA
GTGAGGGTAATGGTTACCTCAAGGGTGTCGTCGCACAAATTATTCTCGAT
CCGGGTCGTGGTGCCCCGCTGGACCAAGTCACCTTTCGTCACCCTTTTCG
CTACATGAAACAAAATGAGCTTTTCATTGCCGCTGAGGGTATGTACACCG
ATCAGTTCGTGTACTGCGCTAAGAAAGCCACTCTGATGGGTGGTAATGTG
CTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGAGTTTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACC
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