FC930223
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.902e-17 Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 1 Query: 1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429 G+ I QR G GS F+S + R GP ++ L G GY V I+ +PG AP+ ++ + + AAEG+Y Q V K A+ GN++ + IPEG ++ NVE GD G ARA G YAV+I P+ + Sbjct: 2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEEN 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17 Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 1 Query: 1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429 G+ I QR G GS F+S + R GP ++ L + G GY V +++ +PG AP+ ++ + AAEG+Y Q + AT GN++ + IPEG ++ NVE GD G AR+SG YAV++ P+ + Sbjct: 2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEEN 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17 Identity = 48/140 (34.29%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ +++Q G G+ + S TH RKG ++R SE + G + I+ DPGR +P+ +V + + + L + EGM + C A + GNVLP+ +PEG V N+E GD G L R+ G YA +I+H+ Sbjct: 2 GKRLQSQNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARVRYDNG-----EERLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16 Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ IR QR+G G +++ +H +G + R E G + G V +++ DP R AP+ +V F + L + EG + C A + GN LP+ IPEG + N+E GD G ARA G YA II+H+ Sbjct: 2 GKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDG-----EERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16 Identity = 54/142 (38.03%), Postives = 73/142 (51.41%), Query Frame = 1 Query: 1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 GR I+ QR G G S F++ +H K + SE + + G + I DP R AP+ V F R L +A EG+ + + A + GN LP+R IPEG VCNVE VGD G ARASG A +++H+ D Sbjct: 2 GRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTHDRD 135
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 1 Query: 1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429 G+ I QR G GS F+S + R GP ++ L + G GY V +I+ +PG AP+ ++ + ++ AAEG+Y Q + A GN++ + +PEG +V NVE GD G ARA G YAV++ P+ + Sbjct: 2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLNVTVGRGY----VVEILHEPGLNAPVARIRLENGVEFLN-----FAAEGLYVGQEIEVGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEEN 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 53/142 (37.32%), Postives = 71/142 (50.00%), Query Frame = 1 Query: 1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 GR I+ QR G G S F++ +H K + +E L G V + DP R AP+ +V F L +A+EG+ + AT+ GN LP+ IPEG VCNVE H GD G ARA GV A +++H D Sbjct: 2 GRRIQGQRRGRGTSTFRAPSHRYKAELSHKR---TEDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTHERD 135
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 53/142 (37.32%), Postives = 71/142 (50.00%), Query Frame = 1 Query: 1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 GR I+ QR G G S F++ +H K + +E L G V + DP R AP+ +V F L +A+EG+ + AT+ GN LP+ IPEG VCNVE H GD G ARA GV A +++H D Sbjct: 2 GRRIQGQRRGRGTSTFRAPSHRYKAELSHKR---TEDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTHERD 135
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16 Identity = 53/137 (38.69%), Postives = 72/137 (52.55%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVII 408 G+ +R QR G G+ ++S H GPA++ L L+G V ++I DPGR PL +V + L AAEGMY Q + A GN+LP+ IPEG V NVE GD G LAR +G YA+++ Sbjct: 2 GKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPL----SGDTLRGKVVELIHDPGRYVPLARVVREDGVEF-----LMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVV 129
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16 Identity = 53/142 (37.32%), Postives = 80/142 (56.34%), Query Frame = 1 Query: 1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSE-GNGYLKGVVAQIILDPGRGAPLDQVTFRHPFR-YMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + QR G GS F++ R GPA++ E N L GVV ++ +PGRGAPL V F + YM I EG+ Q +Y KA + G+++ + ++PEG +V N+E GD G LAR+SG YA++++H+ Sbjct: 2 GKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFEDGTKMYM------IPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS 137 The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bpback to top |