FC930223

Overview
NameFC930223
Unique NameFC930223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:98..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.902e-17
Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 1
Query:    1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429
            G+ I  QR G  GS F+S +  R GP ++  L    G GY    V  I+ +PG  AP+ ++   +   +        AAEG+Y  Q V   K A+   GN++ +  IPEG ++ NVE   GD G  ARA G YAV+I   P+ +
Sbjct:    2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEEN 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429
            G+ I  QR G  GS F+S +  R GP ++  L  + G GY    V +++ +PG  AP+ ++       +        AAEG+Y  Q +     AT   GN++ +  IPEG ++ NVE   GD G  AR+SG YAV++   P+ +
Sbjct:    2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEEN 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17
Identity = 48/140 (34.29%), Postives = 75/140 (53.57%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ +++Q  G G+  + S TH RKG  ++R    SE    + G +  I+ DPGR +P+ +V + +      +  L +  EGM     + C   A +  GNVLP+  +PEG  V N+E   GD G L R+ G YA +I+H+
Sbjct:    2 GKRLQSQNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARVRYDNG-----EERLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ IR QR+G G   +++ +H  +G  + R     E  G + G V +++ DP R AP+ +V F        +  L +  EG      + C   A +  GN LP+  IPEG  + N+E   GD G  ARA G YA II+H+
Sbjct:    2 GKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDG-----EERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 54/142 (38.03%), Postives = 73/142 (51.41%), Query Frame = 1
Query:    1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GR I+ QR G G S F++ +H  K     +    SE +  + G +  I  DP R AP+  V F    R      L +A EG+   + +     A +  GN LP+R IPEG  VCNVE  VGD G  ARASG  A +++H+ D
Sbjct:    2 GRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTHDRD 135          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429
            G+ I  QR G  GS F+S +  R GP ++  L  + G GY    V +I+ +PG  AP+ ++   +   ++       AAEG+Y  Q +     A    GN++ +  +PEG +V NVE   GD G  ARA G YAV++   P+ +
Sbjct:    2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLNVTVGRGY----VVEILHEPGLNAPVARIRLENGVEFLN-----FAAEGLYVGQEIEVGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEEN 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 53/142 (37.32%), Postives = 71/142 (50.00%), Query Frame = 1
Query:    1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GR I+ QR G G S F++ +H  K     +    +E    L G V  +  DP R AP+ +V F           L +A+EG+     +     AT+  GN LP+  IPEG  VCNVE H GD G  ARA GV A +++H  D
Sbjct:    2 GRRIQGQRRGRGTSTFRAPSHRYKAELSHKR---TEDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTHERD 135          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALS3 (50S ribosomal protein L2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 53/142 (37.32%), Postives = 71/142 (50.00%), Query Frame = 1
Query:    1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GR I+ QR G G S F++ +H  K     +    +E    L G V  +  DP R AP+ +V F           L +A+EG+     +     AT+  GN LP+  IPEG  VCNVE H GD G  ARA GV A +++H  D
Sbjct:    2 GRRIQGQRRGRGTSTFRAPSHRYKAELSHKR---TEDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTHERD 135          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 53/137 (38.69%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVII 408
            G+ +R QR G G+  ++S  H   GPA++  L        L+G V ++I DPGR  PL +V       +     L  AAEGMY  Q +     A    GN+LP+  IPEG  V NVE   GD G LAR +G YA+++
Sbjct:    2 GKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPL----SGDTLRGKVVELIHDPGRYVPLARVVREDGVEF-----LMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVV 129          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 53/142 (37.32%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSE-GNGYLKGVVAQIILDPGRGAPLDQVTFRHPFR-YMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ +  QR G  GS F++    R GPA++      E  N  L GVV  ++ +PGRGAPL  V F    + YM      I  EG+   Q +Y   KA  + G+++ + ++PEG +V N+E   GD G LAR+SG YA++++H+
Sbjct:    2 GKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFEDGTKMYM------IPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS 137          
The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL2_PYRAE5.902e-1736.1150S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_PYRAR7.708e-1734.0350S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]
RL2_META37.708e-1734.2950S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_METKA1.007e-1634.2950S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_HALWD1.315e-1638.0350S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_PYRIL2.243e-1634.0350S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]
RL2_HALSA2.243e-1637.3250S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_HALS32.243e-1637.3250S ribosomal protein L2P OS=Halobacterium salinar... [more]
RL2_AERPE2.243e-1638.6950S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_THEPD3.825e-1637.3250S ribosomal protein L2P OS=Thermofilum pendens (... [more]

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Properties
Property NameValue
Genbank descriptionC34005B03EF PostHarvC1 Citrus clementina cDNA clone C34005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bp
GGTCGTGTGATTCGCGCACAGCGTATGGGTGCAGGTTCGGGCTTCAAGTC
CCACACCCACCACCGGAAGGGTCCGGCCCAGTTCCGCAGCCTCTACTTCA
GTGAGGGTAATGGTTACCTCAAGGGTGTCGTCGCACAAATTATTCTCGAT
CCGGGTCGTGGTGCCCCGCTGGACCAAGTCACCTTTCGTCACCCTTTTCG
CTACATGAAACAAAATGAGCTTTTCATTGCCGCTGAGGGTATGTACACCG
ATCAGTTCGTGTACTGCGCTAAGAAAGCCACTCTGATGGGTGGTAATGTG
CTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGAGTTTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACC
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