FC930223
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16 Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSGFKSHTHHR-KGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISH 414 G+ + +Q G GS T R K + + G+ ++G++ +++ DP R P+ +V F + + L +A EG+ + C A + GN LP+ IPEG +CN+E GD G AR+SGVYA+I++H Sbjct: 2 GKRLMSQNRGKGSPTYRATSSRFKADLEHIKTF---GDETIEGIITEVVHDPARNCPIIRVKFGNG-----EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH 132
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16 Identity = 50/142 (35.21%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 G+ + QR G G+ F++ +H +G ++ L + L+GVV +I+ DPGR AP+ +V F + +L +A EG+ Q +Y +A + GN LP+ IPEG V N+E GD G RA G YA+++S D Sbjct: 2 GKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFEDGTK-----KLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSRERD 137
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16 Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 1 Query: 1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429 G+ I QR G GS F+S + R GP ++ N +G+V +I+ +PG AP+ ++ + + AAEG+Y Q + A GNVLP+ IPEG +V NVE GD G AR+ G YA++I P+ + Sbjct: 2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYPP------NISGRGIVVEILHEPGLNAPVAKIRMENGVEFFNY-----AAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEEN 134
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.113e-15 Identity = 50/142 (35.21%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 G+ + QR G G+ F++ +H +G ++ L + L+GVV +I+ DPGR AP+ +V F + +L IA EG+ Q +Y +A + GN LP+ IPEG V ++E GD G RA G YA+++S D Sbjct: 2 GKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERT-LRGVVEEILHDPGRTAPVARVKFEDGTK-----KLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSREKD 137
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.113e-15 Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSGFKSHTHHR-KGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + QR G G+ HR K ++RS E G +KG+V I+ DP R AP+ +V F + + + +A E + D + C A + GN LP+ IPEG + ++E+ GD G R+SG YA +I+H+ Sbjct: 2 GKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITHD 136
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15 Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ I +Q G G+ HR A + + FS ++G+V I+ DP R AP+ V + + + +A EG Y Q + C A + GN LP+ SIPEG +CN+E G G ARASGVY ++++H+ Sbjct: 2 GKRIISQNRGKGTPTYRAPSHRYR-ADIKHIKFS--GDLVRGIVEDIMHDPARTAPVALVRLENG-----EKQYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAHD 132
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15 Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 GR I+ QR G G F++ +H K + L E + G + I DP R APL ++ F R L +A EG+ + A + GN LP+ IPEG VCNVE + GD G ARASGV A +++H+ D Sbjct: 2 GRRIQGQRRGRGGPTFRAPSHRYKAELSHKKL---EDVDTITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTHDRD 135
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4) HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15 Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 1 Query: 1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 GR I+ QR G G S F++ +H K + R + E + G V I DP R AP+ V F R L +A EG+ + A + GN LP+ IPEG VCNVE GD G ARASGV A +++H+ Sbjct: 2 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKV---EDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHD 133
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15 Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 1 Query: 1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 GR I QR G G S F++ +H K R++ E + + G V I DP R APL V F R L +A EG+ + A + GN +P+ IPEG VCNVE GD G ARASGV A +++H+ Sbjct: 2 GRRILGQRRGRGTSTFRAPSHRYKADLSHRNV---EESDLVTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTHD 133
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 7.214e-15 Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVII 408 G+ +R QR G G+ +++ H R P ++ S + + +G V ++ DPGR PL + + + AAEGMYT Q V A + GN+LP+ +IPEG + NVE GD G LAR+ G YA+++ Sbjct: 2 GKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFW-----IPAAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILV 133 The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bpback to top |