FC930223

Overview
NameFC930223
Unique NameFC930223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:98..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHR-KGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISH 414
            G+ + +Q  G GS     T  R K   +    +   G+  ++G++ +++ DP R  P+ +V F +      +  L +A EG+     + C   A +  GN LP+  IPEG  +CN+E   GD G  AR+SGVYA+I++H
Sbjct:    2 GKRLMSQNRGKGSPTYRATSSRFKADLEHIKTF---GDETIEGIITEVVHDPARNCPIIRVKFGNG-----EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH 132          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16
Identity = 50/142 (35.21%), Postives = 77/142 (54.23%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G G+  F++ +H  +G  ++  L   +    L+GVV +I+ DPGR AP+ +V F    +     +L +A EG+   Q +Y   +A +  GN LP+  IPEG  V N+E   GD G   RA G YA+++S   D
Sbjct:    2 GKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFEDGTK-----KLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSRERD 137          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 1
Query:    1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429
            G+ I  QR G  GS F+S +  R GP ++        N   +G+V +I+ +PG  AP+ ++   +   +        AAEG+Y  Q +     A    GNVLP+  IPEG +V NVE   GD G  AR+ G YA++I   P+ +
Sbjct:    2 GKRILVQRRGRGGSQFRSPSWKRDGPVRYPP------NISGRGIVVEILHEPGLNAPVAKIRMENGVEFFNY-----AAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEEN 134          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.113e-15
Identity = 50/142 (35.21%), Postives = 77/142 (54.23%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G G+  F++ +H  +G  ++  L   +    L+GVV +I+ DPGR AP+ +V F    +     +L IA EG+   Q +Y   +A +  GN LP+  IPEG  V ++E   GD G   RA G YA+++S   D
Sbjct:    2 GKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERT-LRGVVEEILHDPGRTAPVARVKFEDGTK-----KLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSREKD 137          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.113e-15
Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHR-KGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ +  QR G G+       HR K   ++RS    E  G +KG+V  I+ DP R AP+ +V F +      + +  +A E +  D  + C   A +  GN LP+  IPEG  + ++E+  GD G   R+SG YA +I+H+
Sbjct:    2 GKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITHD 136          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ I +Q  G G+       HR   A  + + FS     ++G+V  I+ DP R AP+  V   +      + +  +A EG Y  Q + C   A +  GN LP+ SIPEG  +CN+E   G  G  ARASGVY ++++H+
Sbjct:    2 GKRIISQNRGKGTPTYRAPSHRYR-ADIKHIKFS--GDLVRGIVEDIMHDPARTAPVALVRLENG-----EKQYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAHD 132          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            GR I+ QR G G   F++ +H  K     + L   E    + G +  I  DP R APL ++ F    R      L +A EG+     +     A +  GN LP+  IPEG  VCNVE + GD G  ARASGV A +++H+ D
Sbjct:    2 GRRIQGQRRGRGGPTFRAPSHRYKAELSHKKL---EDVDTITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTHDRD 135          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 1
Query:    1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            GR I+ QR G G S F++ +H  K   + R +   E    + G V  I  DP R AP+  V F    R      L +A EG+     +     A +  GN LP+  IPEG  VCNVE   GD G  ARASGV A +++H+
Sbjct:    2 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKV---EDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.238e-15
Identity = 53/140 (37.86%), Postives = 70/140 (50.00%), Query Frame = 1
Query:    1 GRVIRAQRMGAG-SGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            GR I  QR G G S F++ +H  K     R++   E +  + G V  I  DP R APL  V F    R      L +A EG+     +     A +  GN +P+  IPEG  VCNVE   GD G  ARASGV A +++H+
Sbjct:    2 GRRILGQRRGRGTSTFRAPSHRYKADLSHRNV---EESDLVTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTHD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.214e-15
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVII 408
            G+ +R QR G G+  +++  H R  P ++ S    + +   +G V ++  DPGR  PL  +   +   +        AAEGMYT Q V     A  + GN+LP+ +IPEG  + NVE   GD G LAR+ G YA+++
Sbjct:    2 GKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFW-----IPAAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILV 133          
The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL2_UNCMA6.525e-1632.3750S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_THEGJ8.522e-1635.2150S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_PYRCJ8.522e-1634.7250S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_PYRKO1.113e-1535.2150S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_METS31.113e-1533.5750S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_METTP1.899e-1534.5350S ribosomal protein L2P OS=Methanosaeta thermoph... [more]
RL2_HALLT1.899e-1536.6250S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_HALMA2.480e-1537.8650S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_NATPD3.238e-1537.8650S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_IGNH47.214e-1535.0450S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005B03EF PostHarvC1 Citrus clementina cDNA clone C34005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bp
GGTCGTGTGATTCGCGCACAGCGTATGGGTGCAGGTTCGGGCTTCAAGTC
CCACACCCACCACCGGAAGGGTCCGGCCCAGTTCCGCAGCCTCTACTTCA
GTGAGGGTAATGGTTACCTCAAGGGTGTCGTCGCACAAATTATTCTCGAT
CCGGGTCGTGGTGCCCCGCTGGACCAAGTCACCTTTCGTCACCCTTTTCG
CTACATGAAACAAAATGAGCTTTTCATTGCCGCTGAGGGTATGTACACCG
ATCAGTTCGTGTACTGCGCTAAGAAAGCCACTCTGATGGGTGGTAATGTG
CTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGAGTTTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACC
back to top