FC930223

Overview
NameFC930223
Unique NameFC930223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.231e-14
Identity = 50/144 (34.72%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPDND 429
            G+ I  QR G  GS F+S +  R+GP ++  L  + G GY    V  II  PG  AP+ ++   +   ++       AAEG+Y  Q +   + A+   GNV+ +   PEG +V NVE   GD G  AR+ G YAV++   P+ +
Sbjct:    2 GKRILVQRRGRGGSQFRSPSWRREGPVRYPPLG-TAGRGY----VVDIIHVPGLNAPVAKIRLENGLEFLNY-----AAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEEN 135          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.231e-14
Identity = 45/142 (31.69%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFI-AAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNP 420
            G+ + +Q  G G+  +++ +H  K   +   +   + N  L+G V  I  DP R AP+ +V F +        ELF+ A+EG+     + C   A +  GN++P+ ++PEG  +CN+E    D G   R+SGVYA +++H P
Sbjct:    2 GKRLISQNRGRGTPTYRAPSHKYKADLRHPRV---DENTSLQGEVIDIEHDPARSAPIAKVAFENG------EELFLLASEGVAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNIESKPNDGGKFVRSSGVYATVVTHEP 134          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.231e-14
Identity = 51/135 (37.78%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    4 RVIRAQRMGAGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVII 408
            R+I  +R  A   FK+  H    PA++  L   + +   K VV  ++ DPGR  PL QV       +        A EGMY  Q +     A  + GN+LPV  IPEG  V N+E   GD G   RASG YAVI+
Sbjct:    4 RIIPQRRGKASPVFKTPDHIHVAPARYPLL---DPSKTYKAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIV 130          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.607e-14
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    1 GRVIRAQRMG-AGSGFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFI-AAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISH 414
            G+ I  QR G  GS F+S +  R  P ++      +    ++G++ +++   G  AP   V   +        E+++ A EG+Y  + +     A +  GNV+P+  IPEG +VCN+E  VGD G  AR+SG Y V++ H
Sbjct:    2 GKKILVQRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVLENG------EEMYLPAVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIH 135          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +  R G  ++ +++     G+L G V  I+ +PG  AP+  +   +  +++ Q     A +G+  +Q +   K + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  + D
Sbjct:    2 GKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +  R G  ++ +++     G+L G V  I+ +PG  AP+  +   +  +++ Q     A +G+  +Q +   K + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  + D
Sbjct:    2 GKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +  R G  ++ +++     G+L G V  I+ +PG  AP+  +   +  +++ Q     A +G+  +Q +   K + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  + D
Sbjct:    2 GKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +  R G  ++ +++     G+L G V  I+ +PG  AP+  +   +  +++ Q     A +G+  +Q +   K + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  + D
Sbjct:    2 GKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +  R G  ++ +++     G+L G V  I+ +PG  AP+  +   +  +++ Q     A +G+  +Q +   K + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  + D
Sbjct:    2 GKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.580e-14
Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G G+  F++ +H  +G  ++  L  ++    L G V +I+ DPGR AP+ +V F +        +L IA EG+   + +     A +  GN LP+  IPEG+ V ++E   GD G   RA GVYA+++S   D
Sbjct:    2 GKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKT-LVGKVVEILHDPGRTAPVARVKFENGME-----KLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSREKD 137          
The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL2_THENV1.231e-1434.7250S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_METMA1.231e-1431.6950S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_DESK11.231e-1437.7850S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_CALMQ1.607e-1432.1450S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_SULIY2.099e-1431.6950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM2.099e-1431.6950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIL2.099e-1431.6950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIK2.099e-1431.6950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIA2.099e-1431.6950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_THEON3.580e-1433.8050S ribosomal protein L2P OS=Thermococcus onnurine... [more]

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Properties
Property NameValue
Genbank descriptionC34005B03EF PostHarvC1 Citrus clementina cDNA clone C34005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bp
GGTCGTGTGATTCGCGCACAGCGTATGGGTGCAGGTTCGGGCTTCAAGTC
CCACACCCACCACCGGAAGGGTCCGGCCCAGTTCCGCAGCCTCTACTTCA
GTGAGGGTAATGGTTACCTCAAGGGTGTCGTCGCACAAATTATTCTCGAT
CCGGGTCGTGGTGCCCCGCTGGACCAAGTCACCTTTCGTCACCCTTTTCG
CTACATGAAACAAAATGAGCTTTTCATTGCCGCTGAGGGTATGTACACCG
ATCAGTTCGTGTACTGCGCTAAGAAAGCCACTCTGATGGGTGGTAATGTG
CTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGAGTTTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACC
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