FC930223

Overview
NameFC930223
Unique NameFC930223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:98..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.580e-14
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    1 GRVIRAQRMGAGS-GFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVI 405
            G+ +  QR G G   F+S +  R GPA++ ++      G  KG +  I+ +PG  AP+ +V   +  ++        A +G+   Q +   K AT+  GN++ V  +PEG V+CNVE   GD G  ARA+G YAVI
Sbjct:    2 GKKLLQQRAGRGGINFRSPSWRRVGPARYPNI-----EGDHKGKIIDILHNPGVTAPVVKVKLDNGLQFY-----IPAVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVI 127          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.580e-14
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFI-AAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISH 414
            G+ + +Q  G G+  +++ +H  K   +   +   + N  L+G V  I  DP R AP+ +V F +        ELF+ A+EG+     + C   A +  GN++P+ ++PEG  +CNVE    D G   R+SGVYA +++H
Sbjct:    2 GKRLISQNRGRGTPTYRAPSHKYKADLRHPRV---DENSSLRGEVVGIEHDPARSAPIAKVAFENG------EELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH 132          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFI-AAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417
            G+ +  QR G GS  ++S       PA++  L        L+G V +++ DPGR  PL  +   +       +E +I AAEGMY  Q +     A  + GN+LPV  IPEG  V N+E   GD G L RA G YA+I+  +
Sbjct:    2 GKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLTPVT----LRGRVVELVHDPGRWVPLAHIVLENG------DEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS 132          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.107e-14
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F+S +  R G  ++ +++     G+L G V  I+ +PG   P+  +   +  +++ Q     A +G+  +Q +   K + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  + D
Sbjct:    2 GKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNTPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.361e-13
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISH 414
            G+ I +Q  G G+  +++ +H  K  A+ R     E N  ++G V  +  DP R AP+ +V F        +  L +A+EG+     + C   A +  GN++P+  +PEG  +CN+E    D G   R+SGVYA +++H
Sbjct:    2 GKRIISQNRGRGTPTYRAPSHKYK--AELRHPRVDE-NTSIQGKVINLEHDPARSAPIAKVVFE-----TGEERLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH 132          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.777e-13
Identity = 44/142 (30.99%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423
            G+ +  QR G GS  F++    R G  ++ +++     G+  G V  I+ +PG  AP+  V   +  +++ Q     A +G+  +Q +   K + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  + D
Sbjct:    2 GKNLLQQRAGKGSPTFRNPGWLRIGKVRYPNIF-----GHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133          
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.466e-12
Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = 1
Query:   10 IRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIIS 411
            I +Q  G GS  +++ +H  K   +   +   +    L G V  I  DP R AP+  V F +      + +  +  EG+   + + C   A +  GN LP+  IPEG  +CN+E    D G  AR+SGVYA ++S
Sbjct:    5 IISQNRGRGSPTYRAPSHKYKAELKHPRV---DEESTLNGTVIGIEHDPARSAPIAMVAFENG-----KKQFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVS 131          
The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL2_SULAC3.580e-1435.2950S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_METAC3.580e-1432.1450S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_HYPBU4.676e-1436.1750S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_SULIN6.107e-1430.9950S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_METBF1.361e-1331.6550S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_SULSO1.777e-1330.9950S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_METBU7.466e-1231.8550S ribosomal protein L2P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionC34005B03EF PostHarvC1 Citrus clementina cDNA clone C34005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bp
GGTCGTGTGATTCGCGCACAGCGTATGGGTGCAGGTTCGGGCTTCAAGTC
CCACACCCACCACCGGAAGGGTCCGGCCCAGTTCCGCAGCCTCTACTTCA
GTGAGGGTAATGGTTACCTCAAGGGTGTCGTCGCACAAATTATTCTCGAT
CCGGGTCGTGGTGCCCCGCTGGACCAAGTCACCTTTCGTCACCCTTTTCG
CTACATGAAACAAAATGAGCTTTTCATTGCCGCTGAGGGTATGTACACCG
ATCAGTTCGTGTACTGCGCTAAGAAAGCCACTCTGATGGGTGGTAATGTG
CTGCCCGTTAGATCTATCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCA
TCATGTTGGTGATCGCGGTGTTTTGGCTAGAGCTTCTGGAGTTTATGCCG
TTATCATCAGTCATAACCCCGATAATGACACC
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