FC930223
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.580e-14 Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1 Query: 1 GRVIRAQRMGAGS-GFKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVI 405 G+ + QR G G F+S + R GPA++ ++ G KG + I+ +PG AP+ +V + ++ A +G+ Q + K AT+ GN++ V +PEG V+CNVE GD G ARA+G YAVI Sbjct: 2 GKKLLQQRAGRGGINFRSPSWRRVGPARYPNI-----EGDHKGKIIDILHNPGVTAPVVKVKLDNGLQFY-----IPAVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVI 127
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.580e-14 Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFI-AAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISH 414 G+ + +Q G G+ +++ +H K + + + N L+G V I DP R AP+ +V F + ELF+ A+EG+ + C A + GN++P+ ++PEG +CNVE D G R+SGVYA +++H Sbjct: 2 GKRLISQNRGRGTPTYRAPSHKYKADLRHPRV---DENSSLRGEVVGIEHDPARSAPIAKVAFENG------EELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH 132
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14 Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFI-AAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHN 417 G+ + QR G GS ++S PA++ L L+G V +++ DPGR PL + + +E +I AAEGMY Q + A + GN+LPV IPEG V N+E GD G L RA G YA+I+ + Sbjct: 2 GKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLTPVT----LRGRVVELVHDPGRWVPLAHIVLENG------DEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS 132
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 6.107e-14 Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 G+ + QR G GS F+S + R G ++ +++ G+L G V I+ +PG P+ + + +++ Q A +G+ +Q + K + + GNV+ + PEG +VCNVE + GD G AR++G YAV++ + D Sbjct: 2 GKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNTPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.361e-13 Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISH 414 G+ I +Q G G+ +++ +H K A+ R E N ++G V + DP R AP+ +V F + L +A+EG+ + C A + GN++P+ +PEG +CN+E D G R+SGVYA +++H Sbjct: 2 GKRIISQNRGRGTPTYRAPSHKYK--AELRHPRVDE-NTSIQGKVINLEHDPARSAPIAKVVFE-----TGEERLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH 132
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.777e-13 Identity = 44/142 (30.99%), Postives = 76/142 (53.52%), Query Frame = 1 Query: 1 GRVIRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIISHNPD 423 G+ + QR G GS F++ R G ++ +++ G+ G V I+ +PG AP+ V + +++ Q A +G+ +Q + K + + GNV+ + PEG +VCNVE + GD G AR++G YAV++ + D Sbjct: 2 GKNLLQQRAGKGSPTFRNPGWLRIGKVRYPNIF-----GHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD 133
BLAST of FC930223 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 7.466e-12 Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = 1 Query: 10 IRAQRMGAGSG-FKSHTHHRKGPAQFRSLYFSEGNGYLKGVVAQIILDPGRGAPLDQVTFRHPFRYMKQNELFIAAEGMYTDQFVYCAKKATLMGGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGVYAVIIS 411 I +Q G GS +++ +H K + + + L G V I DP R AP+ V F + + + + EG+ + + C A + GN LP+ IPEG +CN+E D G AR+SGVYA ++S Sbjct: 5 IISQNRGRGSPTYRAPSHKYKAELKHPRV---DEESTLNGTVIGIEHDPARSAPIAMVAFENG-----KKQFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVS 131 The following BLAST results are available for this feature:
BLAST of FC930223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930223 ID=FC930223; Name=FC930223; organism=Citrus clementina; type=EST; length=432bpback to top |