FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930224_ssr22 microsatellite FC930224_ssr22:22..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12665 contig Ccv1_Contig12665:14..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.244e-80
Identity = 139/199 (69.85%), Postives = 166/199 (83.42%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIRAQRKGAGSVFK+H   RKG A+ RSLDF ER+GY++GVV +IIHDPGRGAPLA V FR P+RY  +KELFIA EGM+TGQFVYCG+KATL +GNV+P+  +PEG ++CN+E   GDRG LAR SG+YA +I+HN D   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AYHK++VKRN WPKV
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 3.618e-80
Identity = 136/199 (68.34%), Postives = 168/199 (84.42%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+V
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 297.745 bits (761), Expect = 3.618e-80
Identity = 136/199 (68.34%), Postives = 168/199 (84.42%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+V
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 3.618e-80
Identity = 136/199 (68.34%), Postives = 168/199 (84.42%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+V
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 3.618e-80
Identity = 136/199 (68.34%), Postives = 168/199 (84.42%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+V
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 297.745 bits (761), Expect = 3.618e-80
Identity = 136/199 (68.34%), Postives = 168/199 (84.42%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIR QRKGAGSVF++H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+V
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 296.204 bits (757), Expect = 1.053e-79
Identity = 135/199 (67.84%), Postives = 167/199 (83.92%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIR QRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELFIAAEG++TGQF+YCGKKA L +GNVLPV ++PEG +VC +E   GDRG LARASG+YA +ISHNP+   +RVKLPSG+KK+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+V
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 295.819 bits (756), Expect = 1.375e-79
Identity = 136/199 (68.34%), Postives = 167/199 (83.92%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIRAQRKGAGSVFK+H  HRKG A+ R +DF ER+GY+KG+V +IIHDPGRG PLA+V FR P+R+ K+ ELFIAAEG++TGQFV+CGKKA L +GNVLPV  +PEG ++C +E   GDRG LARASG+YA +ISHNP+   +RVKLPSGAKK+I S  RA++G VAGGGR +KP+LKAG AYHK++VKRNCWP+V
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.063e-79
Identity = 137/199 (68.84%), Postives = 164/199 (82.41%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGRVIRAQRKG GSVF +HT  RKG  + R+LD+ ER+GYLKG V +IIHDPGRGAPLA V FR P+++  +K+LFIAAEGMYTGQFVYCGK+A L +GNVLP+  +PEG +VCN+E   GDRG LAR SG+YA +I+HNPD   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AY K++VKRNCWPKV
Sbjct:    1 MGRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKV 199          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 9.223e-76
Identity = 133/200 (66.50%), Postives = 163/200 (81.50%), Query Frame = 1
Query:   82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGR+IRAQRKG AGSVF +HTHHRKG  +FR+LD+ ER GY+KGVV EIIHDPGRGAPLARV F+   ++   K+LFIA EGM+TGQFV+ GKKATL +GN+LP+  +PEG ++CNVE  +GD G +AR SG+YA I+SHNPD   TR+KLPSG+KK + S  RAMIG VAGGGR +KP+LKAG A+HK+RVK+N WPKV
Sbjct:    1 MGRIIRAQRKGKAGSVFGAHTHHRKGTPRFRALDYAERQGYVKGVVKEIIHDPGRGAPLARVVFKGLTQFKLDKQLFIAPEGMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKV 200          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_DROME1.244e-8069.8560S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_RAT3.618e-8068.3460S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB3.618e-8068.3460S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE3.618e-8068.3460S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_HUMAN3.618e-8068.3460S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_BOVIN3.618e-8068.3460S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_DANRE1.053e-7967.8460S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_ICTPU1.375e-7968.3460S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_AEDAL3.063e-7968.8460S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_DICDI9.223e-7666.5060S ribosomal protein L8 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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