FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18 Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ + +P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A Sbjct: 22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18 Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ + +P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A Sbjct: 22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_EDWI9 (50S ribosomal protein L2 OS=Edwardsiella ictaluri (strain 93-146) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17 Identity = 54/158 (34.18%), Postives = 83/158 (52.53%), Query Frame = 1 Query: 163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 Q+R +DF + VV + +DP R A +A V ++ ++ +AA+G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + IP+ CRA +G+V + L KAG A Sbjct: 61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAAKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIPADCRATLGEVGNAEHMLRVLGKAGAA 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17 Identity = 60/189 (31.75%), Postives = 96/189 (50.79%), Query Frame = 1 Query: 79 EMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 E V+ + G +V+ T HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G + G+ + VGN LP+R+IP G ++ N+E G G L RA+G A +++ + D +V++PSG ++I + CRA IGQV+ + KAG + Sbjct: 30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17 Identity = 60/189 (31.75%), Postives = 96/189 (50.79%), Query Frame = 1 Query: 79 EMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 E V+ + G +V+ T HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G + G+ + VGN LP+R+IP G ++ N+E G G L RA+G A +++ + D +V++PSG ++I + CRA IGQV+ + KAG + Sbjct: 30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCS5 (50S ribosomal protein L2 OS=Mycoplasma synoviae (strain 53) GN=rplB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17 Identity = 61/191 (31.94%), Postives = 94/191 (49.21%), Query Frame = 1 Query: 70 PSKEMGRVIR--AQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 P+K + R+++ A R G + H H + +R +DF + VV I +DP R A + + + +K IA +G+ GQ V G+ A ++VGN LP+ +IPEG + N+E G LAR++G A I+ + + VKL SG + I + CRA +G V G E L+ G A Sbjct: 30 PTKSLLRILKNSAGRNNQGKITVRH-HGGRVKRFYRLVDFKRNKDNIPAVVKTIEYDPNRSANICLLAYADG-----EKRYIIAPKGIKVGQKVVSGEGADIIVGNSLPLSNIPEGTFIHNIEMQPGGGAKLARSAGTSAQILGKDDNGKYVVVKLKSGETRRILARCRATVGMV---GNEEYSLVNVGKA 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17 Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 1 Query: 145 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G V G+ + VGN LP+R+IP G +V N+E G G L RA+G A +++ + D +++PSG ++I + CRA IGQV+ + KAG + Sbjct: 53 HRGGGHKRRYRIIDFKRDKDGIPGKVAAIEYDPNRTAFIALIHYADG-----EKRYIIAPHGLKVGDIVESGENVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMA--KEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAW (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MW2) GN=rplB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17 Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ +P K + + + +A R G + H H Q+R +DF + V I +DP R A +A V + +K IA +G+ GQ V G +A + VGN LP+++IP G VV N+E G G +AR++G A ++ + ++L SG ++I S CRA IGQV G + L+ G A Sbjct: 22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAS (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MSSA476) GN=rplB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17 Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ +P K + + + +A R G + H H Q+R +DF + V I +DP R A +A V + +K IA +G+ GQ V G +A + VGN LP+++IP G VV N+E G G +AR++G A ++ + ++L SG ++I S CRA IGQV G + L+ G A Sbjct: 22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAR (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MRSA252) GN=rplB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17 Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ +P K + + + +A R G + H H Q+R +DF + V I +DP R A +A V + +K IA +G+ GQ V G +A + VGN LP+++IP G VV N+E G G +AR++G A ++ + ++L SG ++I S CRA IGQV G + L+ G A Sbjct: 22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |