FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAN (50S ribosomal protein L2 OS=Staphylococcus aureus (strain N315) GN=rplB PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAM (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplB PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAE (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Newman) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAC (50S ribosomal protein L2 OS=Staphylococcus aureus (strain COL) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAAB (50S ribosomal protein L2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAA9 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain JH9) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAA8 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAA3 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain USA300) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAA2 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain JH1) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
[Close]
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAA1 (50S ribosomal protein L2 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1 
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  +A R   G +   H H      Q+R +DF      +   V  I +DP R A +A V +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G VV N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLKPLPKKAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADG-----EKRYIIAPKGLEVGQIVESGAEADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STAAN5.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAM5.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAE5.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAC5.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAAB5.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA95.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA85.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA35.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA25.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]
RL2_STAA15.687e-1731.8250S ribosomal protein L2 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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