FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_CLOPH (50S ribosomal protein L2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 61/206 (29.61%), Postives = 100/206 (48.54%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH 642
            H   +    ++ S     ++ + +K AG  +  K    H+ G ++  +R +DF  +   +  VV  I +DP R A +A + +        +K   +A  G+  GQ V  G  A + VGN LP+ +IP G+ + N+E + G  G L R++G+ A +++      T R  LPSG  +++P  CRA +GQV         L KAG   H
Sbjct:   15 HMTGSDFAEITTSTPEKSLVVSLKKNAGRNNQGKITVRHQGGGSRRKYRIIDFKRKKDGISAVVKTIEYDPNRTANIALICYADG-----EKAYILAPNGLQVGQTVMNGATAEIKVGNCLPLANIPVGSQIHNIELYPGKGGQLVRSAGNSAQLMAREGKYATLR--LPSGEMRMVPISCRATLGQVGNIDHELVTLGKAGRVRH 213          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SERP5 (50S ribosomal protein L2 OS=Serratia proteamaculans (strain 568) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 60/200 (30.00%), Postives = 93/200 (46.50%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            H P  +  S S  +     I  +  G G     H  H      +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  I++   D     ++L SG  + +P  CRA +G+V       + L KAG A
Sbjct:   30 HAPLLEKLSKSGGRNNNGRITTRHIGGG-----HKQH------YRLVDFKRNKDGVAAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKVGNALPMRNIPVGSTVHNVEMKPGKGGQIARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVPVDCRATLGEVGNAEHMLRVLGKAGAA 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAA 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCH7 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 1
Query:   70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            P K +  +++ +  G  S  K    H+ G    ++R +DF      + G+V  I +DP R A +A +++        +K   +A + +  GQ +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK
Sbjct:   30 PEKSLLTILK-KHSGRNSQGKITVRHQGGRHKRKYRLIDFKRNKDDIPGIVKTIEYDPNRSANIALISYIDG-----EKRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK 217          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCH2 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 1
Query:   70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            P K +  +++ +  G  S  K    H+ G    ++R +DF      + G+V  I +DP R A +A +++        +K   +A + +  GQ +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + D     +KL SG  + I + CRA IG V     +   + KAG   HK
Sbjct:   30 PEKSLLTILK-KHSGRNSQGKITVRHQGGRHKRKYRLIDFKRNKDDIPGIVKTIEYDPNRSANIALISYIDG-----EKRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK 217          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 58/196 (29.59%), Postives = 98/196 (50.00%), Query Frame = 1
Query:   52 QAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            + + L   ++    I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  + N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +
Sbjct:   36 KGKKLKSGRDSSGRISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS 213          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_TREDE (50S ribosomal protein L2 OS=Treponema denticola GN=rplB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 64/197 (32.49%), Postives = 100/197 (50.76%), Query Frame = 1
Query:   55 AQSLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            AQ    S   G+  RA R   G  SV      H++   ++R +DF +RN Y + G V  I +DP R A +A + +        +K   IA +G+  GQ +  G+ ATL V N LP+ +IP G  V N+E  +G  G +AR++G  A++ +   + +   ++LPSG  +++   C A IG+V         L KAG +
Sbjct:   26 AQKPEKSLTTGKKNRAGRDSRGRISVRGQGGGHKQ---KYRQIDF-KRNKYGIPGTVRTIEYDPNRSANIALIFYADG-----EKRYIIAPKGLKIGQKIMSGEMATLDVANALPLEAIPVGFTVHNIELTIGRGGQMARSAGAGALVAA--KEGEYVTIRLPSGETRLVNKKCYATIGEVGNEDHMNTSLGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_CHLT3 (50S ribosomal protein L2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            +R +DF      +   VA I +DP R A +A +++        +K   +A  G+  G  + CG +A + VGN LP+++IP G  V N+E   G  G +AR++G YAV+++   + D   +K+PSG  + +   C+A +G +         L KAG +
Sbjct:   62 YRIIDFKRNKDGIPAKVATIEYDPNRTARIALLSYADG-----EKRYILAPNGIKVGDLIECGPEADIKVGNALPLKNIPVGIEVHNIEMRPGKGGQMARSAGSYAVLVA--KEGDYATLKMPSGELRKVRVECKATVGVIGNLEHENLSLGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            +R +DF      +   V  + +DP R A +A V +        ++   +A +G+  G  V  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IPS CRA IG+V       + L KAG
Sbjct:   62 YRIVDFKRNKDGIPATVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLKAGDKVQSGVDAAIKTGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PELCD (50S ribosomal protein L2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  106 RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            R  AG + K HT   H RK    +R +DF      +   +A I +DP R A +A   +        +K   +A  G+  G  V   ++A +  GN L +RSIP G  V N+E  +G  G LAR++G YA+I +   +    +++LPSG  +++   C A +GQV         + KAG
Sbjct:   43 RNNAGRITKRHTGGGHKRK----YRVIDFRREKKEIPAKIASIEYDPNRSARIALACYADG-----EKRYILAPLGLKVGDVVIASEQADIKPGNALSIRSIPLGTWVHNIELKIGKGGQLARSAGTYAMIAA--KEGKYAQLRLPSGEVRLVLQDCCATVGQVGNVQHENVKIGKAG 209          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_CLOPH5.687e-1729.6150S ribosomal protein L2 OS=Clostridium phytoferme... [more]
RL2_SERP57.427e-1730.0050S ribosomal protein L2 OS=Serratia proteamaculan... [more]
RL2_PECCP9.700e-1732.9150S ribosomal protein L2 OS=Pectobacterium carotov... [more]
RL2_MYCH79.700e-1730.4150S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_MYCH29.700e-1730.4150S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_BORGA1.267e-1629.5950S ribosomal protein L2 OS=Borrelia garinii GN=rp... [more]
RL2_TREDE1.655e-1632.4950S ribosomal protein L2 OS=Treponema denticola GN... [more]
RL2_CHLT31.655e-1631.2150S ribosomal protein L2 OS=Chloroherpeton thalass... [more]
RL2_PROMH2.161e-1634.1950S ribosomal protein L2 OS=Proteus mirabilis (str... [more]
RL2_PELCD2.161e-1632.0250S ribosomal protein L2 OS=Pelobacter carbinolicu... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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