FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_CLOPH (50S ribosomal protein L2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17 Identity = 61/206 (29.61%), Postives = 100/206 (48.54%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH 642 H + ++ S ++ + +K AG + K H+ G ++ +R +DF + + VV I +DP R A +A + + +K +A G+ GQ V G A + VGN LP+ +IP G+ + N+E + G G L R++G+ A +++ T R LPSG +++P CRA +GQV L KAG H Sbjct: 15 HMTGSDFAEITTSTPEKSLVVSLKKNAGRNNQGKITVRHQGGGSRRKYRIIDFKRKKDGISAVVKTIEYDPNRTANIALICYADG-----EKAYILAPNGLQVGQTVMNGATAEIKVGNCLPLANIPVGSQIHNIELYPGKGGQLVRSAGNSAQLMAREGKYATLR--LPSGEMRMVPISCRATLGQVGNIDHELVTLGKAGRVRH 213
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SERP5 (50S ribosomal protein L2 OS=Serratia proteamaculans (strain 568) GN=rplB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17 Identity = 60/200 (30.00%), Postives = 93/200 (46.50%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 H P + S S + I + G G H H +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + VGN LP+R+IP G+ V NVE G G +AR++G Y I++ D ++L SG + +P CRA +G+V + L KAG A Sbjct: 30 HAPLLEKLSKSGGRNNNGRITTRHIGGG-----HKQH------YRLVDFKRNKDGVAAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKVGNALPMRNIPVGSTVHNVEMKPGKGGQIARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVPVDCRATLGEVGNAEHMLRVLGKAGAA 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 1 Query: 163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 Q+R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG A Sbjct: 61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAA 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCH7 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 P K + +++ + G S K H+ G ++R +DF + G+V I +DP R A +A +++ +K +A + + GQ + G K+ ++VGN LP+ IPEG V N+E G L R++G +A I + D +KL SG + I + CRA IG V + + KAG HK Sbjct: 30 PEKSLLTILK-KHSGRNSQGKITVRHQGGRHKRKYRLIDFKRNKDDIPGIVKTIEYDPNRSANIALISYIDG-----EKRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK 217
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCH2 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplB PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 P K + +++ + G S K H+ G ++R +DF + G+V I +DP R A +A +++ +K +A + + GQ + G K+ ++VGN LP+ IPEG V N+E G L R++G +A I + D +KL SG + I + CRA IG V + + KAG HK Sbjct: 30 PEKSLLTILK-KHSGRNSQGKITVRHQGGRHKRKYRLIDFKRNKDDIPGIVKTIEYDPNRSANIALISYIDG-----EKRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDEDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK 217
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BORGA (50S ribosomal protein L2 OS=Borrelia garinii GN=rplB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16 Identity = 58/196 (29.59%), Postives = 98/196 (50.00%), Query Frame = 1 Query: 52 QAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 + + L ++ I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G + N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + Sbjct: 36 KGKKLKSGRDSSGRISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTIHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANVSIGKAGKS 213
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_TREDE (50S ribosomal protein L2 OS=Treponema denticola GN=rplB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16 Identity = 64/197 (32.49%), Postives = 100/197 (50.76%), Query Frame = 1 Query: 55 AQSLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 AQ S G+ RA R G SV H++ ++R +DF +RN Y + G V I +DP R A +A + + +K IA +G+ GQ + G+ ATL V N LP+ +IP G V N+E +G G +AR++G A++ + + + ++LPSG +++ C A IG+V L KAG + Sbjct: 26 AQKPEKSLTTGKKNRAGRDSRGRISVRGQGGGHKQ---KYRQIDF-KRNKYGIPGTVRTIEYDPNRSANIALIFYADG-----EKRYIIAPKGLKIGQKIMSGEMATLDVANALPLEAIPVGFTVHNIELTIGRGGQMARSAGAGALVAA--KEGEYVTIRLPSGETRLVNKKCYATIGEVGNEDHMNTSLGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_CHLT3 (50S ribosomal protein L2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplB PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16 Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 +R +DF + VA I +DP R A +A +++ +K +A G+ G + CG +A + VGN LP+++IP G V N+E G G +AR++G YAV+++ + D +K+PSG + + C+A +G + L KAG + Sbjct: 62 YRIIDFKRNKDGIPAKVATIEYDPNRTARIALLSYADG-----EKRYILAPNGIKVGDLIECGPEADIKVGNALPLKNIPVGIEVHNIEMRPGKGGQMARSAGSYAVLVA--KEGDYATLKMPSGELRKVRVECKATVGVIGNLEHENLSLGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16 Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 +R +DF + V + +DP R A +A V + ++ +A +G+ G V G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + IPS CRA IG+V + L KAG Sbjct: 62 YRIVDFKRNKDGIPATVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLKAGDKVQSGVDAAIKTGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PELCD (50S ribosomal protein L2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16 Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1 Query: 106 RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 R AG + K HT H RK +R +DF + +A I +DP R A +A + +K +A G+ G V ++A + GN L +RSIP G V N+E +G G LAR++G YA+I + + +++LPSG +++ C A +GQV + KAG Sbjct: 43 RNNAGRITKRHTGGGHKRK----YRVIDFRREKKEIPAKIASIEYDPNRSARIALACYADG-----EKRYILAPLGLKVGDVVIASEQADIKPGNALSIRSIPLGTWVHNIELKIGKGGQLARSAGTYAMIAA--KEGKYAQLRLPSGEVRLVLQDCCATVGQVGNVQHENVKIGKAG 209 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |