FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_CLOCE (50S ribosomal protein L2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16 Identity = 53/169 (31.36%), Postives = 89/169 (52.66%), Query Frame = 1 Query: 142 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 HH G Q +R +DF +K VA I +DP R A +A + + +K +A G+ G FV G+ + + GN LP+ +IP G+++ N+E G G + RA+G+ A +++ + + +++LPSG +++ CRA +GQ+ G E +K G A K Sbjct: 53 HHGGGNRQKYRVIDFKRDKDGIKAKVATIEYDPNRTANIALLNYADG-----EKRYILAPVGLKVGDFVESGESSDIRTGNALPLANIPVGSMIHNIELKPGKGGQMVRAAGNAAQLMA--KEGEYAQIRLPSGEVRMVRINCRATLGQI---GNIEHENVKIGKAGRK 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16 Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 1 Query: 61 SLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 SL K + +IR K G + + T H G + +R +DF + +V + +DP R + +A + + R +A++G+ G + G A + +GN LP+++IP G V+ NVE G G +AR++G Y +IS +N ++L SG + + S CRA IG+V + L KAG Sbjct: 23 SLYKGKPISSLIRKNSKSGGRNNCGRITTRHIGGRHKRFYRIIDFKRNKDNIPAIVERLEYDPNRSSNIALILYSDGDR-----RYILASKGLMVGSKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16 Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1 Query: 139 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG + Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16 Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1 Query: 139 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG + Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_TREPS (50S ribosomal protein L2 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rplB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16 Identity = 62/198 (31.31%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ + +P K + R + + G G+ + HR G ++R +DF + G V I +DP R +A V + + QK +A +G+ GQ V G+K L N LP+ IP G V NVE +G G +AR++G AVI + D ++LPSG +++ C A IG++ L KAG A Sbjct: 22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRA 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_TREPA (50S ribosomal protein L2 OS=Treponema pallidum GN=rplB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16 Identity = 62/198 (31.31%), Postives = 95/198 (47.98%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ + +P K + R + + G G+ + HR G ++R +DF + G V I +DP R +A V + + QK +A +G+ GQ V G+K L N LP+ IP G V NVE +G G +AR++G AVI + D ++LPSG +++ C A IG++ L KAG A Sbjct: 22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRA 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BACHD (50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16 Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 1 Query: 103 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 ++ G + K H+ G Q+R +DF + G VA I +DP R A +A + + +K +A +G+ G + G +A + VGN LP+++IP G V+ N+E G G L R++G A ++ + D V+L SG + I + CRA IGQV G E L+ G A Sbjct: 39 KKGGRNNQGKMTVRHQGGGHKRQYRIIDFKRNKDGIPGRVATIEYDPNRSANIALINYVDG-----EKRYILAPKGLKVGMTIESGPEADIKVGNALPLKNIPVGTVIHNIELKPGKGGQLVRSAGAEAQLL--GKEGDYVLVRLNSGETRYILATCRATIGQV---GNLEHELVNIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLTR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 60/181 (33.15%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 94 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 I + KG G H+K ++R +DF +RN +GVV +I +DP R LA V+++ K +A +G+ G V G ++ GN LP++ IP G+ V VE G V+ARA+G YA ++ D + ++L SG +++ S C+A IG V+ R + L KAG + Sbjct: 49 ITIRHKGGG--------HKK---KYRIIDF-KRNRNDQGVVEKIEYDPNRSGFLALVSYKCD----DTKSYILAPQGIKPGDIVMSGSGIDILPGNCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGR--DGNYVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLPP (50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1 Query: 139 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG + Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSDQGIVEKIEYDPNRSGFLALISYKED----DTKSYILAPQGMKPGDVVTAGDDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNLDHKNRKLGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAES (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 62/198 (31.31%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ +P K + + + RA R G + H H Q+R +DF + V I +DP R A +A + + +K IA +G+ GQ V G +A + VGN LP+++IP G V+ N+E G G LAR++G + ++ + ++L SG ++I S CRA IGQV G + L+ G A Sbjct: 22 AEITKTTPEKSLLQPLPKRAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGIIAKVDSIQYDPNRSANIALLVYADG-----EKRYIIAPKGLQVGQTVESGAEADIKVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |