FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_CLOCE (50S ribosomal protein L2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 53/169 (31.36%), Postives = 89/169 (52.66%), Query Frame = 1
Query:  142 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            HH  G  Q +R +DF      +K  VA I +DP R A +A + +        +K   +A  G+  G FV  G+ + +  GN LP+ +IP G+++ N+E   G  G + RA+G+ A +++   + +  +++LPSG  +++   CRA +GQ+   G  E   +K G A  K
Sbjct:   53 HHGGGNRQKYRVIDFKRDKDGIKAKVATIEYDPNRTANIALLNYADG-----EKRYILAPVGLKVGDFVESGESSDIRTGNALPLANIPVGSMIHNIELKPGKGGQMVRAAGNAAQLMA--KEGEYAQIRLPSGEVRMVRINCRATLGQI---GNIEHENVKIGKAGRK 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   61 SLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            SL   K +  +IR   K  G  +  +  T H  G  +  +R +DF      +  +V  + +DP R + +A + +    R        +A++G+  G  +  G  A + +GN LP+++IP G V+ NVE   G  G +AR++G Y  +IS   +N    ++L SG  + + S CRA IG+V       + L KAG
Sbjct:   23 SLYKGKPISSLIRKNSKSGGRNNCGRITTRHIGGRHKRFYRIIDFKRNKDNIPAIVERLEYDPNRSSNIALILYSDGDR-----RYILASKGLMVGSKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  139 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG +
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  139 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG +
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_TREPS (50S ribosomal protein L2 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 62/198 (31.31%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+  + +P K + R  +  + G G+  +    HR G    ++R +DF      + G V  I +DP R   +A V + +      QK   +A +G+  GQ V  G+K  L   N LP+  IP G  V NVE  +G  G +AR++G  AVI +   D     ++LPSG  +++   C A IG++         L KAG A
Sbjct:   22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRA 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_TREPA (50S ribosomal protein L2 OS=Treponema pallidum GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 62/198 (31.31%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+  + +P K + R  +  + G G+  +    HR G    ++R +DF      + G V  I +DP R   +A V + +      QK   +A +G+  GQ V  G+K  L   N LP+  IP G  V NVE  +G  G +AR++G  AVI +   D     ++LPSG  +++   C A IG++         L KAG A
Sbjct:   22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRA 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BACHD (50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  103 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            ++ G  +  K    H+ G    Q+R +DF      + G VA I +DP R A +A + +        +K   +A +G+  G  +  G +A + VGN LP+++IP G V+ N+E   G  G L R++G  A ++    + D   V+L SG  + I + CRA IGQV   G  E  L+  G A
Sbjct:   39 KKGGRNNQGKMTVRHQGGGHKRQYRIIDFKRNKDGIPGRVATIEYDPNRSANIALINYVDG-----EKRYILAPKGLKVGMTIESGPEADIKVGNALPLKNIPVGTVIHNIELKPGKGGQLVRSAGAEAQLL--GKEGDYVLVRLNSGETRYILATCRATIGQV---GNLEHELVNIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLTR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 60/181 (33.15%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   94 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            I  + KG G        H+K   ++R +DF +RN   +GVV +I +DP R   LA V+++        K   +A +G+  G  V  G    ++ GN LP++ IP G+ V  VE   G   V+ARA+G YA ++    D +   ++L SG  +++ S C+A IG V+   R  + L KAG +
Sbjct:   49 ITIRHKGGG--------HKK---KYRIIDF-KRNRNDQGVVEKIEYDPNRSGFLALVSYKCD----DTKSYILAPQGIKPGDIVMSGSGIDILPGNCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGR--DGNYVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_WOLPP (50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  139 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG +
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSDQGIVEKIEYDPNRSGFLALISYKED----DTKSYILAPQGMKPGDVVTAGDDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNLDHKNRKLGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAES (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 62/198 (31.31%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  RA R   G +   H H      Q+R +DF      +   V  I +DP R A +A + +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G V+ N+E   G  G LAR++G  + ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLQPLPKRAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGIIAKVDSIQYDPNRSANIALLVYADG-----EKRYIIAPKGLQVGQTVESGAEADIKVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_CLOCE2.161e-1631.3650S ribosomal protein L2 OS=Clostridium cellulolyt... [more]
RL2_BUCBP2.161e-1629.9050S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_WOLWR2.822e-1634.5250S ribosomal protein L2 OS=Wolbachia sp. subsp. D... [more]
RL2_WOLPM2.822e-1634.5250S ribosomal protein L2 OS=Wolbachia pipientis wM... [more]
RL2_TREPS2.822e-1631.3150S ribosomal protein L2 OS=Treponema pallidum sub... [more]
RL2_TREPA2.822e-1631.3150S ribosomal protein L2 OS=Treponema pallidum GN=... [more]
RL2_BACHD2.822e-1632.2250S ribosomal protein L2 OS=Bacillus halodurans GN... [more]
RL2_WOLTR3.686e-1633.1550S ribosomal protein L2 OS=Wolbachia sp. subsp. B... [more]
RL2_WOLPP3.686e-1634.5250S ribosomal protein L2 OS=Wolbachia pipientis su... [more]
RL2_STAES3.686e-1631.3150S ribosomal protein L2 OS=Staphylococcus epiderm... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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