FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAEQ (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 62/198 (31.31%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+    +P K + + +  RA R   G +   H H      Q+R +DF      +   V  I +DP R A +A + +        +K   IA +G+  GQ V  G +A + VGN LP+++IP G V+ N+E   G  G LAR++G  + ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITKTTPEKSLLQPLPKRAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGIIAKVDSIQYDPNRSANIALLVYADG-----EKRYIIAPKGLQVGQTVESGAEADIKVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCHJ (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 58/194 (29.90%), Postives = 94/194 (48.45%), Query Frame = 1
Query:   70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            P K +  +++ +  G  S  K    H+ G    ++R +DF      + G+V  I +DP R A +A +++        +K   +A + +  GQ +  G K+ ++VGN LP+  IPEG  V N+E   G    L R++G +A I   + +     +KL SG  + I + CRA IG V     +   + KAG   HK
Sbjct:   30 PEKSLLTILK-KHSGRNSQGKITVRHQGGRHKRKYRLIDFKRNKDDITGIVKTIEYDPNRSANIALISYIDG-----EKRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDENGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK 217          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   94 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS 213          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   94 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS 213          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BACSK (50S ribosomal protein L2 OS=Bacillus clausii (strain KSM-K16) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            Q+R +DF      + G VA I +DP R A +A + +        +K   +A +G+  G  +  G  A +  GN LP+ +IP G V+ N+E   G  G L R++G  A ++    + D   V+L SG  + I S CRA IGQV   G  E  L+  G A
Sbjct:   61 QYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYILAPKGLTVGTVIVSGPDADIKTGNALPLANIPVGTVIHNIELRPGKGGQLVRSAGTEAQLL--GKEGDYALVRLNSGETRYILSTCRATIGQV---GNVEHELINIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 55/180 (30.56%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            +I A+ +G G        H++    +R +DF     ++ G +  I +DP R A + +V +++       K   +   G+  G  +  G KA + +GNVLP+ ++P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A IGQV       +   KAG
Sbjct:   49 IITARHRGGG--------HKR---LYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNVLPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG 210          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 59/193 (30.57%), Postives = 93/193 (48.19%), Query Frame = 1
Query:   64 LSPSKEM--GRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            L P K++  G+     R G G +      HR G  +  +R +DF     ++ G +  I +DP R A + +V +++       K   +   G+  G  +  G KA + +GN LP+ ++P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A IGQV       +   KAG
Sbjct:   27 LDPQKKLTSGQHHCGSRNGRGIIT---ARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCPU (50S ribosomal protein L2 OS=Mycoplasma pulmonis GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 54/195 (27.69%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   67 SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            +P K + ++++ +  G  +     T H+ G  +  +R +DF      ++ +V  I +DP R A ++ VT+        +K   ++ +G+  GQ +  G+   ++VGN L + +IPEG  + N+E      G+LAR++G YA I+          ++L SG  + + + CRA IG V     +   + KAG   HK
Sbjct:   29 APEKSLMKILK-KNSGRNNRGVITTRHKGGREKRFYRLVDFKRNKDNIEAIVKTIEYDPNRSANISLVTYLDG-----EKRYILSPKGIKVGQRIVSGENVDIIVGNSLELANIPEGTNIHNIELQPKGGGILARSAGSYAQILGKEESGKYVLIRLKSGEVRKVFAKCRATIGIVGNEEHSLVNIGKAGRNRHK 217          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MACCJ (50S ribosomal protein L2 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 64/198 (32.32%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+  S SP K +   +  ++ G  +  K    HR G    Q+R +DF      +   VA I +DP R A +A + +        +K   IA +G+  G  V  G +A + VGN LP+++IP G V+ N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A
Sbjct:   22 AEITSTSPEKSLLAPL-PRKAGRNNQGKLTVRHRGGGHKRQYRIIDFKRNKDGIPAKVATIEYDPNRSANIALLHYLDG-----EKRYIIAPKGLTVGTQVVNGPEADIKVGNCLPLQNIPVGTVIHNIELKPGKGGQLVRSAGASAQVL--GKEGKYVLVRLKSGEVRMILSTCRATIGQV---GNEQHELINIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAA 211          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STAEQ3.686e-1631.3150S ribosomal protein L2 OS=Staphylococcus epiderm... [more]
RL2_MYCHJ3.686e-1629.9050S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_BORBZ3.686e-1631.8750S ribosomal protein L2 OS=Borrelia burgdorferi (... [more]
RL2_BORBU3.686e-1631.8750S ribosomal protein L2 OS=Borrelia burgdorferi G... [more]
RL2_BACSK3.686e-1634.1850S ribosomal protein L2 OS=Bacillus clausii (stra... [more]
RK2_PINKO3.686e-1630.5650S ribosomal protein L2, chloroplastic OS=Pinus k... [more]
RK2_PICAB3.686e-1630.5750S ribosomal protein L2, chloroplastic OS=Picea a... [more]
RL2_MYCPU4.814e-1627.6950S ribosomal protein L2 OS=Mycoplasma pulmonis GN... [more]
RL2_MACCJ4.814e-1632.3250S ribosomal protein L2 OS=Macrococcus caseolytic... [more]
RL2_ERWCT4.814e-1632.4850S ribosomal protein L2 OS=Erwinia carotovora sub... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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