FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STAEQ (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 62/198 (31.31%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ +P K + + + RA R G + H H Q+R +DF + V I +DP R A +A + + +K IA +G+ GQ V G +A + VGN LP+++IP G V+ N+E G G LAR++G + ++ + ++L SG ++I S CRA IGQV G + L+ G A Sbjct: 22 AEITKTTPEKSLLQPLPKRAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGIIAKVDSIQYDPNRSANIALLVYADG-----EKRYIIAPKGLQVGQTVESGAEADIKVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNLQHELVNVGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCHJ (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=rplB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 58/194 (29.90%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 P K + +++ + G S K H+ G ++R +DF + G+V I +DP R A +A +++ +K +A + + GQ + G K+ ++VGN LP+ IPEG V N+E G L R++G +A I + + +KL SG + I + CRA IG V + + KAG HK Sbjct: 30 PEKSLLTILK-KHSGRNSQGKITVRHQGGRHKRKYRLIDFKRNKDDITGIVKTIEYDPNRSANIALISYIDG-----EKRYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRDENGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK 217
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1 Query: 94 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + Sbjct: 50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS 213
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1 Query: 94 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + Sbjct: 50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS 213
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BACSK (50S ribosomal protein L2 OS=Bacillus clausii (strain KSM-K16) GN=rplB PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 Q+R +DF + G VA I +DP R A +A + + +K +A +G+ G + G A + GN LP+ +IP G V+ N+E G G L R++G A ++ + D V+L SG + I S CRA IGQV G E L+ G A Sbjct: 61 QYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYILAPKGLTVGTVIVSGPDADIKTGNALPLANIPVGTVIHNIELRPGKGGQLVRSAGTEAQLL--GKEGDYALVRLNSGETRYILSTCRATIGQV---GNVEHELINIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 55/180 (30.56%), Postives = 89/180 (49.44%), Query Frame = 1 Query: 91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 +I A+ +G G H++ +R +DF ++ G + I +DP R A + +V +++ K + G+ G + G KA + +GNVLP+ ++P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A IGQV + KAG Sbjct: 49 IITARHRGGG--------HKR---LYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNVLPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG 210
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16 Identity = 59/193 (30.57%), Postives = 93/193 (48.19%), Query Frame = 1 Query: 64 LSPSKEM--GRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 L P K++ G+ R G G + HR G + +R +DF ++ G + I +DP R A + +V +++ K + G+ G + G KA + +GN LP+ ++P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A IGQV + KAG Sbjct: 27 LDPQKKLTSGQHHCGSRNGRGIIT---ARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MYCPU (50S ribosomal protein L2 OS=Mycoplasma pulmonis GN=rplB PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16 Identity = 54/195 (27.69%), Postives = 97/195 (49.74%), Query Frame = 1 Query: 67 SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 +P K + ++++ + G + T H+ G + +R +DF ++ +V I +DP R A ++ VT+ +K ++ +G+ GQ + G+ ++VGN L + +IPEG + N+E G+LAR++G YA I+ ++L SG + + + CRA IG V + + KAG HK Sbjct: 29 APEKSLMKILK-KNSGRNNRGVITTRHKGGREKRFYRLVDFKRNKDNIEAIVKTIEYDPNRSANISLVTYLDG-----EKRYILSPKGIKVGQRIVSGENVDIIVGNSLELANIPEGTNIHNIELQPKGGGILARSAGSYAQILGKEESGKYVLIRLKSGEVRKVFAKCRATIGIVGNEEHSLVNIGKAGRNRHK 217
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_MACCJ (50S ribosomal protein L2 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplB PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16 Identity = 64/198 (32.32%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ S SP K + + ++ G + K HR G Q+R +DF + VA I +DP R A +A + + +K IA +G+ G V G +A + VGN LP+++IP G V+ N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV G + L+ G A Sbjct: 22 AEITSTSPEKSLLAPL-PRKAGRNNQGKLTVRHRGGGHKRQYRIIDFKRNKDGIPAKVATIEYDPNRSANIALLHYLDG-----EKRYIIAPKGLTVGTQVVNGPEADIKVGNCLPLQNIPVGTVIHNIELKPGKGGQLVRSAGASAQVL--GKEGKYVLVRLKSGEVRMILSTCRATIGQV---GNEQHELINIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16 Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG A Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAA 211 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |