FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BURPP (50S ribosomal protein L2 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 54/198 (27.27%), Postives = 94/198 (47.47%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            + P   +QS +  +     I  + KG G     H HH      +R +DF      +   V  + +DP R A +A V +        +++  IA +G+  GQ +  G +A +  GN LP+R+IP G  +  +E   G    +AR++G  A++++   +    +V+L SG  + +   CRA IG+V     + + + KAG
Sbjct:   30 YAPLLDSQSSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFRRNKDGIAAKVERLEYDPNRSANIALVLYADG-----ERKYIIAPKGLTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGIYAQVRLRSGEIRRVHVECRATIGEVGNEEHSLRQIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BUCCC (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Cinara cedri GN=rplB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            +R +DF  R   +  VV  I +DP R + +  + +++      ++   +  +G+  G  +  G    + +GN LP++ IP G ++ N+E   G  G +AR++G YA +IS   +N    ++L SG  + I   CRA IG+V       + L KAG
Sbjct:   62 YRCIDFKRRYDNVPAVVQRIEYDPNRSSNIILILYKNG-----KRSYILEPKGIKVGDIIESGNLVPIKLGNALPIKKIPIGTILHNIEIKSGKGGQIARSAGSYAQLIS--KENKYVVIRLRSGELRKIHIECRATIGEVGNSEHMLRILGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BACTN (50S ribosomal protein L2 OS=Bacteroides thetaiotaomicron GN=rplB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  145 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 663
            HRK     R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G+ A   +GN LP+++IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG +  + R  RN
Sbjct:   58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLYYADG-----EKRYIIAPNGLQVGATLMSGETAAPEIGNTLPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLERSGKAGRSRWQGRRPRN 220          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_NICDE (50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633
            +I A+ +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  + I   C A +GQV   G  +K L +AG+
Sbjct:   46 IITARHRGGG--------HKR---LYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRSISKNCSATVGQVGNVGVNQKSLGRAGS 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633
            HR G  +  +R +DF        G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SYNY3 (50S ribosomal protein L2 OS=Synechocystis sp. (strain PCC 6803) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 53/184 (28.80%), Postives = 88/184 (47.83%), Query Frame = 1
Query:   97 RAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH 642
            R  +KG  +     + HR G  +  +R +DF      +   VA I +DP R A +A + +        +K   +A  G+  G  V  G++A   +GN LP+  IP G+ + NVE   G  G + R++G +A +++   + D   +KLPS   +++   C A +G+V+        L KAG   H
Sbjct:   37 RHDQKGRNNRGVITSRHRGGGHKKLYRIIDFKRNKQNIPARVAAIEYDPNRNARIALLFYTDG-----EKRYILAPAGLQVGMTVIAGEEAPFEIGNTLPLSRIPLGSEIHNVELVAGRGGQMVRSAGAFAQVVA--KEGDYVTIKLPSKEVRMVRKECVATLGRVSNAEFRNLKLGKAGRKRH 213          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SHEPW (50S ribosomal protein L2 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            +R +DF      +   V  + +DP R A +A V +        ++   IAA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG
Sbjct:   62 YRLIDFKRNKDGIPAKVERLEYDPNRTANIALVLYADG-----ERRYIIAAKGMKAGDSIQSGIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOS5 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            H+ G A+  +R +DF  R   +  VV  I +DP R A +A V +        +    +A + +  G  V  G K  +  GN +P   +P G +V NVE   G  G LARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK
Sbjct:   53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVIAGAKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            +R++DF      +  VV  + +DP R A +A + ++       ++   +A + M  G  V  G    +  GNV+P+ ++P G +V NVE  +G  G LAR++G YA I+    D D   ++L SG ++++   CR  IG V+        + KAG
Sbjct:   62 YRNVDFKRGKTDVPAVVERLEYDPNRTAFIALIKYQDG-----EQAYILAPQRMAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DQDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAG 209          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BURPP5.885e-1427.2750S ribosomal protein L2 OS=Burkholderia phytofirm... [more]
RL2_BUCCC5.885e-1429.6850S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BACTN5.885e-1431.7950S ribosomal protein L2 OS=Bacteroides thetaiotao... [more]
RK2_NICDE5.885e-1428.1850S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_LEMMI5.885e-1430.3050S ribosomal protein L2, chloroplastic OS=Lemna m... [more]
RK2B_LIRTU5.885e-1430.3050S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RL2_SYNY37.686e-1428.8050S ribosomal protein L2 OS=Synechocystis sp. (str... [more]
RL2_SHEPW7.686e-1431.6150S ribosomal protein L2 OS=Shewanella piezotolera... [more]
RL2_RHOS57.686e-1430.7750S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_NITWN7.686e-1430.3250S ribosomal protein L2 OS=Nitrobacter winogradsk... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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