FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BURPP (50S ribosomal protein L2 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rplB PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 54/198 (27.27%), Postives = 94/198 (47.47%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 + P +QS + + I + KG G H HH +R +DF + V + +DP R A +A V + +++ IA +G+ GQ + G +A + GN LP+R+IP G + +E G +AR++G A++++ + +V+L SG + + CRA IG+V + + + KAG Sbjct: 30 YAPLLDSQSSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFRRNKDGIAAKVERLEYDPNRSANIALVLYADG-----ERKYIIAPKGLTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGIYAQVRLRSGEIRRVHVECRATIGEVGNEEHSLRQIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BUCCC (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Cinara cedri GN=rplB PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 +R +DF R + VV I +DP R + + + +++ ++ + +G+ G + G + +GN LP++ IP G ++ N+E G G +AR++G YA +IS +N ++L SG + I CRA IG+V + L KAG Sbjct: 62 YRCIDFKRRYDNVPAVVQRIEYDPNRSSNIILILYKNG-----KRSYILEPKGIKVGDIIESGNLVPIKLGNALPIKKIPIGTILHNIEIKSGKGGQIARSAGSYAQLIS--KENKYVVIRLRSGELRKIHIECRATIGEVGNSEHMLRILGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BACTN (50S ribosomal protein L2 OS=Bacteroides thetaiotaomicron GN=rplB PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 1 Query: 145 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 663 HRK R +DF + VV I +DP R A +A + + +K IA G+ G + G+ A +GN LP+++IP G V+ N+E G L R++G++A + S + +KLPSG + I S C+A IG V + KAG + + R RN Sbjct: 58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLYYADG-----EKRYIIAPNGLQVGATLMSGETAAPEIGNTLPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLERSGKAGRSRWQGRRPRN 220
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_NICDE (50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = 1 Query: 91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633 +I A+ +G G H++ +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG + I C A +GQV G +K L +AG+ Sbjct: 46 IITARHRGGG--------HKR---LYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRSISKNCSATVGQVGNVGVNQKSLGRAGS 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A +GQV G +K L +AG+ Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633 HR G + +R +DF G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A +GQV G +K L +AG+ Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SYNY3 (50S ribosomal protein L2 OS=Synechocystis sp. (strain PCC 6803) GN=rplB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 53/184 (28.80%), Postives = 88/184 (47.83%), Query Frame = 1 Query: 97 RAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH 642 R +KG + + HR G + +R +DF + VA I +DP R A +A + + +K +A G+ G V G++A +GN LP+ IP G+ + NVE G G + R++G +A +++ + D +KLPS +++ C A +G+V+ L KAG H Sbjct: 37 RHDQKGRNNRGVITSRHRGGGHKKLYRIIDFKRNKQNIPARVAAIEYDPNRNARIALLFYTDG-----EKRYILAPAGLQVGMTVIAGEEAPFEIGNTLPLSRIPLGSEIHNVELVAGRGGQMVRSAGAFAQVVA--KEGDYVTIKLPSKEVRMVRKECVATLGRVSNAEFRNLKLGKAGRKRH 213
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SHEPW (50S ribosomal protein L2 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 +R +DF + V + +DP R A +A V + ++ IAA+GM G + G A + GN +P+R+IP G+VV VE G +AR++G Y +I+ D ++L SG + +P CRA +G+V + L KAG Sbjct: 62 YRLIDFKRNKDGIPAKVERLEYDPNRTANIALVLYADG-----ERRYIIAAKGMKAGDSIQSGIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOS5 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 H+ G A+ +R +DF R + VV I +DP R A +A V + + +A + + G V G K + GN +P +P G +V NVE G G LARA+G YA + D +++L SG +++ C A +G V+ + + KAG HK Sbjct: 53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVIAGAKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 +R++DF + VV + +DP R A +A + ++ ++ +A + M G V G + GNV+P+ ++P G +V NVE +G G LAR++G YA I+ D D ++L SG ++++ CR IG V+ + KAG Sbjct: 62 YRNVDFKRGKTDVPAVVERLEYDPNRTAFIALIKYQDG-----EQAYILAPQRMAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DQDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAG 209 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |