FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRS7 (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 +R +DF ++ VV I +DP R A +A V + K IA +G+ GQ + G A + +GN LP+ +IP G VV N+E G G L RA+G A ++ + V+L SG ++I CRA +G V G ++ L+ G A Sbjct: 62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPDADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQQSLVNIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STREM (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 +R +DF ++ VV I +DP R A +A V + K IA +G+ GQ + G A + +GN LP+ +IP G VV N+E G G L RA+G A ++ + V+L SG ++I CRA +G V G ++ L+ G A Sbjct: 62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPDADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQQSLVNIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOSK (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 H+ G A+ +R +DF R + VV I +DP R A +A V + + +A + + G V G K + GN +P +P G +V NVE G G LARA+G YA + D +++L SG +++ C A +G V+ + + KAG HK Sbjct: 53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVVAGVKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOS4 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 H+ G A+ +R +DF R + VV I +DP R A +A V + + +A + + G V G K + GN +P +P G +V NVE G G LARA+G YA + D +++L SG +++ C A +G V+ + + KAG HK Sbjct: 53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVVAGVKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOS1 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 H+ G A+ +R +DF R + VV I +DP R A +A V + + +A + + G V G K + GN +P +P G +V NVE G G LARA+G YA + D +++L SG +++ C A +G V+ + + KAG HK Sbjct: 53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVVAGVKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG Sbjct: 30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG Sbjct: 30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_LEPCP (50S ribosomal protein L2 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 59/213 (27.70%), Postives = 97/213 (45.54%), Query Frame = 1 Query: 1 GIFPITHIYIYIHQPAA---QAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 G+ I H +++ +P A + Q + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ GQ V G +A + GN LP+R+IP G+ + VE G +AR++G +++ + +V+L SG + I CRA IG+V+ + KAG Sbjct: 15 GVVKIVHKHLHKGKPEASLLEPQMQNAGRNNNGHITVRHKGGG-----HKHH------YRVVDFRRNKDGIPAKVERIEYDPNRTAHIALICYADG-----ERSYIIAPRGLEAGQTVLNGAEAPIKAGNTLPIRNIPVGSTIHCVEMMPGKGAQIARSAGTSVTLMAR--EGIYAQVRLRSGEVRKIHIDCRATIGEVSNEEHNLRQYGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 58/191 (30.37%), Postives = 89/191 (46.60%), Query Frame = 1 Query: 64 LSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 L+P K+ G G S + HR G ++R +DF + VA I +DP R A +A + + +K +A + G V G+ A + GN L +++IP G ++ N+E G G LARA+G A I++ + +KLPSG ++I C+A IGQV + KAG Sbjct: 34 LAPLKKTG--------GRNSYGRVTVRHRGGGHKRRYRIIDFKRDKDGVPARVASIEYDPNRSARIALLHYVDG-----EKRYILAPNKLQVGDTVKSGEDAEIKPGNALKLKNIPVGTIIHNIELKPGKGGQLARAAGTMAQILA--KEGKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_GEOTN (50S ribosomal protein L2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 53/180 (29.44%), Postives = 86/180 (47.78%), Query Frame = 1 Query: 103 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 ++ G + K H+ G Q+R +DF + G VA I +DP R A +A + + +K +A + + G + G A + VGN LP+ +IP G +V N+E G G L RA+G A ++ + ++L SG ++I CRA +G+V G + L+ G A Sbjct: 39 KKAGRNNQGKITVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYILAPKNLKVGMEIMSGPNADIKVGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVL--GKEGKYVIIRLASGEVRMILGKCRATVGEV---GNEQHELVNIGKA 208 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |