FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRS7 (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            +R +DF      ++ VV  I +DP R A +A V +         K   IA +G+  GQ +  G  A + +GN LP+ +IP G VV N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G V   G  ++ L+  G A
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPDADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQQSLVNIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STREM (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            +R +DF      ++ VV  I +DP R A +A V +         K   IA +G+  GQ +  G  A + +GN LP+ +IP G VV N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G V   G  ++ L+  G A
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPDADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQQSLVNIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOSK (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            H+ G A+  +R +DF  R   +  VV  I +DP R A +A V +        +    +A + +  G  V  G K  +  GN +P   +P G +V NVE   G  G LARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK
Sbjct:   53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVVAGVKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOS4 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            H+ G A+  +R +DF  R   +  VV  I +DP R A +A V +        +    +A + +  G  V  G K  +  GN +P   +P G +V NVE   G  G LARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK
Sbjct:   53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVVAGVKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RHOS1 (50S ribosomal protein L2 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            H+ G A+  +R +DF  R   +  VV  I +DP R A +A V +        +    +A + +  G  V  G K  +  GN +P   +P G +V NVE   G  G LARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK
Sbjct:   53 HKGGGAKRLYRIVDFKRRKFDVPAVVERIEYDPNRTAFIALVRYEDG-----ELAYILAPQRLAVGDSVVAGVKTDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQLARAAGTYAQFVGR--DGGYAQIRLSSGELRMVRQECMATVGAVSNPDNSNQNFGKAGRMRHK 214          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIMF (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            + P  + ++ +  +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG
Sbjct:   30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIMA (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup A GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            + P  + ++ +  +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG
Sbjct:   30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_LEPCP (50S ribosomal protein L2 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 59/213 (27.70%), Postives = 97/213 (45.54%), Query Frame = 1
Query:    1 GIFPITHIYIYIHQPAA---QAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            G+  I H +++  +P A   + Q  +  +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  GQ V  G +A +  GN LP+R+IP G+ +  VE   G    +AR++G    +++   +    +V+L SG  + I   CRA IG+V+      +   KAG
Sbjct:   15 GVVKIVHKHLHKGKPEASLLEPQMQNAGRNNNGHITVRHKGGG-----HKHH------YRVVDFRRNKDGIPAKVERIEYDPNRTAHIALICYADG-----ERSYIIAPRGLEAGQTVLNGAEAPIKAGNTLPIRNIPVGSTIHCVEMMPGKGAQIARSAGTSVTLMAR--EGIYAQVRLRSGEVRKIHIDCRATIGEVSNEEHNLRQYGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 58/191 (30.37%), Postives = 89/191 (46.60%), Query Frame = 1
Query:   64 LSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            L+P K+ G        G  S  +    HR G    ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V  G+ A +  GN L +++IP G ++ N+E   G  G LARA+G  A I++   +     +KLPSG  ++I   C+A IGQV         + KAG
Sbjct:   34 LAPLKKTG--------GRNSYGRVTVRHRGGGHKRRYRIIDFKRDKDGVPARVASIEYDPNRSARIALLHYVDG-----EKRYILAPNKLQVGDTVKSGEDAEIKPGNALKLKNIPVGTIIHNIELKPGKGGQLARAAGTMAQILA--KEGKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_GEOTN (50S ribosomal protein L2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 53/180 (29.44%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  103 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            ++ G  +  K    H+ G    Q+R +DF      + G VA I +DP R A +A + +        +K   +A + +  G  +  G  A + VGN LP+ +IP G +V N+E   G  G L RA+G  A ++    +     ++L SG  ++I   CRA +G+V   G  +  L+  G A
Sbjct:   39 KKAGRNNQGKITVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYILAPKNLKVGMEIMSGPNADIKVGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVL--GKEGKYVIIRLASGEVRMILGKCRATVGEV---GNEQHELVNIGKA 208          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRS71.004e-1333.1250S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_STREM1.004e-1333.1250S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_RHOSK1.004e-1330.7750S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_RHOS41.004e-1330.7750S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_RHOS11.004e-1330.7750S ribosomal protein L2 OS=Rhodobacter sphaeroide... [more]
RL2_NEIMF1.004e-1327.7850S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIMA1.004e-1327.7850S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_LEPCP1.004e-1327.7050S ribosomal protein L2 OS=Leptothrix cholodnii (... [more]
RL2_HALOH1.004e-1330.3750S ribosomal protein L2 OS=Halothermothrix orenii... [more]
RL2_GEOTN1.004e-1329.4450S ribosomal protein L2 OS=Geobacillus thermodeni... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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