FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_GEOMG (50S ribosomal protein L2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 55/204 (26.96%), Postives = 95/204 (46.57%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSK-EMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            HQ  +    ++ S  E   ++  ++ G  + F   T    G     ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V     A +  GN LP+R+IP G ++ N+E  +G  G LAR++G +A +++   +    +VKLPSG  +++   C A +GQV         + KAG +
Sbjct:   15 HQTCSAFDEITTSSPEKSLLLTLKKTGGRNSFGRITSRHIGGGHKKKYRLVDFRRNKIDIPAKVASIEYDPNRSARIALLHYSDG-----EKRYILAPLNLKVGDVVLASTSADIKPGNSLPLRAIPLGTIIHNIELKIGKGGQLARSAGTFAQLMA--KEGKYAQVKLPSGEVRMVLLDCMATVGQVGNIDHENVTIGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ENTFA (50S ribosomal protein L2 OS=Enterococcus faecalis GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 58/200 (29.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   49 AQAQSLSPSKEMGRVIR--AQRKGAGSVFKSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            A+  + +P K + + ++  A R   G +   H    H++   Q+R +DF      +  VV  I +DP R A +A V +         K   +A +G+  G  +  G +A + VGN LP+ +IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IG V   G  +  L+  G A
Sbjct:   22 AEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKR---QYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGV-----KAYILAPKGLEVGMRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGSV---GNEQHELINIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_DELAS (50S ribosomal protein L2 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 59/205 (28.78%), Postives = 98/205 (47.80%), Query Frame = 1
Query:   31 YIHQPAAQAQSLSPS-KEMGRV----IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            ++H+ A  A  L P  ++ GR     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + +   CRA IG+VA    + + L KAG
Sbjct:   23 HLHKGAGFAPLLEPQHQKSGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRTKDGIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKIGAGAQIARSAGTSATLLAR--EGIYAQVRMRSGEVRKVHIECRATIGEVANEEHSLRRLGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BURXL (50S ribosomal protein L2 OS=Burkholderia xenovorans (strain LB400) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 54/196 (27.55%), Postives = 92/196 (46.94%), Query Frame = 1
Query:   43 PAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            P   +QS +  +     I  + KG G     H HH      +R +DF      +   V  + +DP R A +A V +        ++   IA +G+  GQ +  G +A +  GN LP+R+IP G  +  +E   G    +AR++G  A++++   +    +V+L SG  + +   CRA IG+V     + + + KAG
Sbjct:   32 PLLDSQSTTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFRRNKDGIAAKVERLEYDPNRSANIALVLYADG-----ERRYIIAPKGVTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGIYAQVRLRSGEIRRVHVECRATIGEVGNEEHSLRQIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ALHEH (50S ribosomal protein L2 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 54/185 (29.19%), Postives = 88/185 (47.57%), Query Frame = 1
Query:   97 RAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            + ++ G  +  +  T HR G    ++R +DF      + G V  + +DP R A +A V +R       ++   IA  G+  G  +  G  A +  GN LP+R+IP G  V  VE   G    LAR++G  A +++   +     V+L SG  + + + C+A +G+V       + L KAG   HK
Sbjct:   37 KTRKGGRNNTGRITTRHRGGGHKQRYRVIDFRRDKDGVPGQVERLEYDPNRSANIALVLYRDG-----ERRYIIAPRGVSAGTEIVSGVDAPIKPGNALPLRNIPVGTQVHCVELRPGKGAQLARSAGANAQLVAR--EGRYATVRLRSGEMRQVLAECKATVGEVGNSEHALRSLGKAGAKRHK 214          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = 1
Query:   91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633
            +I A+ +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G K  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +     ++LPSG  +++   C A +GQV   G  +K L +AG+
Sbjct:   46 IITARHRGGG--------HKR---LYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGS 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = 1
Query:   91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633
            +I A+ +G G        H++    +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G K  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +     ++LPSG  +++   C A +GQV   G  +K L +AG+
Sbjct:   46 IITARHRGGG--------HKR---LYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGS 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 48/165 (29.09%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV      +K L +AG+
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVEVNQKKLGRAGS 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 55/191 (28.80%), Postives = 88/191 (46.07%), Query Frame = 1
Query:   70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            P K + + I  ++KG  +       HR G  +  +R +DF      + G V  + +DP R A +  V +        +K   +A   +  G  +  G +A   +GN +P+  IP G VV NVE + G  G + RA+G  A +++   +     +KLPSG  ++I   C A IGQ+         L KAG +
Sbjct:   35 PEKSLLQFIH-RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS 217          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_GEOMG1.004e-1326.9650S ribosomal protein L2 OS=Geobacter metallireduc... [more]
RL2_ENTFA1.004e-1329.0050S ribosomal protein L2 OS=Enterococcus faecalis ... [more]
RL2_DELAS1.004e-1328.7850S ribosomal protein L2 OS=Delftia acidovorans (s... [more]
RL2_BURXL1.004e-1327.5550S ribosomal protein L2 OS=Burkholderia xenovoran... [more]
RL2_ALHEH1.004e-1329.1950S ribosomal protein L2 OS=Alkalilimnicola ehrlic... [more]
RK2_SACOF1.004e-1327.6250S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_SACHY1.004e-1327.6250S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_EUCGG1.004e-1329.0950S ribosomal protein L2, chloroplastic OS=Eucalyp... [more]
RK2_DAUCA1.004e-1329.7050S ribosomal protein L2, chloroplastic OS=Daucus ... [more]
RL2_SYNJB1.311e-1328.8050S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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