FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_GEOMG (50S ribosomal protein L2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 55/204 (26.96%), Postives = 95/204 (46.57%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSK-EMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 HQ + ++ S E ++ ++ G + F T G ++R +DF + VA I +DP R A +A + + +K +A + G V A + GN LP+R+IP G ++ N+E +G G LAR++G +A +++ + +VKLPSG +++ C A +GQV + KAG + Sbjct: 15 HQTCSAFDEITTSSPEKSLLLTLKKTGGRNSFGRITSRHIGGGHKKKYRLVDFRRNKIDIPAKVASIEYDPNRSARIALLHYSDG-----EKRYILAPLNLKVGDVVLASTSADIKPGNSLPLRAIPLGTIIHNIELKIGKGGQLARSAGTFAQLMA--KEGKYAQVKLPSGEVRMVLLDCMATVGQVGNIDHENVTIGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ENTFA (50S ribosomal protein L2 OS=Enterococcus faecalis GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 58/200 (29.00%), Postives = 96/200 (48.00%), Query Frame = 1 Query: 49 AQAQSLSPSKEMGRVIR--AQRKGAGSVFKSHTH--HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 A+ + +P K + + ++ A R G + H H++ Q+R +DF + VV I +DP R A +A V + K +A +G+ G + G +A + VGN LP+ +IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IG V G + L+ G A Sbjct: 22 AEITTSTPEKSLLQPLKNNAGRNNNGRITVRHQGGGHKR---QYRVIDFKRNKDNVAAVVKTIEYDPNRSANIALVHYEDGV-----KAYILAPKGLEVGMRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGSV---GNEQHELINIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_DELAS (50S ribosomal protein L2 OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 59/205 (28.78%), Postives = 98/205 (47.80%), Query Frame = 1 Query: 31 YIHQPAAQAQSLSPS-KEMGRV----IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 ++H+ A A L P ++ GR I + KG G H HH +R +DF + V I +DP R A +A V + ++ IA + G + G +A + VGN LP+R+IP G+ + +E +G +AR++G A +++ + +V++ SG + + CRA IG+VA + + L KAG Sbjct: 23 HLHKGAGFAPLLEPQHQKSGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRTKDGIPAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATIVSGSEAPIRVGNTLPIRNIPVGSTIHCIELKIGAGAQIARSAGTSATLLAR--EGIYAQVRMRSGEVRKVHIECRATIGEVANEEHSLRRLGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BURXL (50S ribosomal protein L2 OS=Burkholderia xenovorans (strain LB400) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 54/196 (27.55%), Postives = 92/196 (46.94%), Query Frame = 1 Query: 43 PAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 P +QS + + I + KG G H HH +R +DF + V + +DP R A +A V + ++ IA +G+ GQ + G +A + GN LP+R+IP G + +E G +AR++G A++++ + +V+L SG + + CRA IG+V + + + KAG Sbjct: 32 PLLDSQSTTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFRRNKDGIAAKVERLEYDPNRSANIALVLYADG-----ERRYIIAPKGVTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGIYAQVRLRSGEIRRVHVECRATIGEVGNEEHSLRQIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ALHEH (50S ribosomal protein L2 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 54/185 (29.19%), Postives = 88/185 (47.57%), Query Frame = 1 Query: 97 RAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 + ++ G + + T HR G ++R +DF + G V + +DP R A +A V +R ++ IA G+ G + G A + GN LP+R+IP G V VE G LAR++G A +++ + V+L SG + + + C+A +G+V + L KAG HK Sbjct: 37 KTRKGGRNNTGRITTRHRGGGHKQRYRVIDFRRDKDGVPGQVERLEYDPNRSANIALVLYRDG-----ERRYIIAPRGVSAGTEIVSGVDAPIKPGNALPLRNIPVGTQVHCVELRPGKGAQLARSAGANAQLVAR--EGRYATVRLRSGEMRQVLAECKATVGEVGNSEHALRSLGKAGAKRHK 214
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = 1 Query: 91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633 +I A+ +G G H++ +R +DF + G + I +DP R A + + + +K + G G + G K + +GN LP+ +P G + N+E G G LARA+G A +I+ + ++LPSG +++ C A +GQV G +K L +AG+ Sbjct: 46 IITARHRGGG--------HKR---LYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGS 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = 1 Query: 91 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633 +I A+ +G G H++ +R +DF + G + I +DP R A + + + +K + G G + G K + +GN LP+ +P G + N+E G G LARA+G A +I+ + ++LPSG +++ C A +GQV G +K L +AG+ Sbjct: 46 IITARHRGGG--------HKR---LYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGS 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 48/165 (29.09%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV +K L +AG+ Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGRIVSIEYDPNRNASICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVEVNQKKLGRAGS 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGN 633 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 55/191 (28.80%), Postives = 88/191 (46.07%), Query Frame = 1 Query: 70 PSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 P K + + I ++KG + HR G + +R +DF + G V + +DP R A + V + +K +A + G + G +A +GN +P+ IP G VV NVE + G G + RA+G A +++ + +KLPSG ++I C A IGQ+ L KAG + Sbjct: 35 PEKSLLQFIH-RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS 217 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |