FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRSY (50S ribosomal protein L2 OS=Streptococcus suis (strain 05ZYH33) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 +R +DF ++ +V I +DP R A +A V + K IA +G+ GQ + G +A + VGN LP+ +IP G VV N+E G G L RA+G A ++ + V+L SG ++I CRA +G V G + L+ G A Sbjct: 62 YRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQHGLVNLGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRS2 (50S ribosomal protein L2 OS=Streptococcus suis (strain 98HAH33) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 +R +DF ++ +V I +DP R A +A V + K IA +G+ GQ + G +A + VGN LP+ +IP G VV N+E G G L RA+G A ++ + V+L SG ++I CRA +G V G + L+ G A Sbjct: 62 YRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQHGLVNLGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRE4 (50S ribosomal protein L2 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 +R +DF ++ VV I +DP R A +A V + K IA +G+ GQ + G A + VGN LP+ +IP G VV N+E G G L RA+G A ++ + V+L SG ++I CRA +G V G ++ L+ G A Sbjct: 62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPDADIKVGNALPLVNIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQQSLVNIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SHEHH (50S ribosomal protein L2 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 +R +DF + V + +DP R A +A V + ++ +AA+GM G + G A + GN +P+R+IP G+VV VE G +AR++G Y +I+ D ++L SG + +P CRA +G+V + L KAG Sbjct: 62 YRLIDFKRNKDGIPAKVERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 56/190 (29.47%), Postives = 89/190 (46.84%), Query Frame = 1 Query: 85 GRVIRAQRKGAGSVFKSHTH------HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 GR ++ KG + H HR G + +R +DF + VV I +DP R A +A + + Q +A + + G V + A + +GN LP++ IP G V NVE VG G +AR++G ++ D+ ++KL SG ++IP C+A IG ++ + L KAG Sbjct: 27 GRPFKSLTKGISKTGGRNNHGRITSWHRGGGHKKLYRIIDFKRNKIDISAVVERIEYDPNRTAFIALIKYEDG-----QYSYILAPQKLSVGDKVISSQDADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 1 Query: 145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645 HR G + +R +DF + VA I +DP R A +A + + +K IA G+ GQ V G A + GN LP+++IP G ++ N+E + G L R++G A +++ + +++PSG +++ CRA IGQV G E + G A K Sbjct: 53 HRGGGHKRLYRIIDFKRDKDGIPAKVASIEYDPNRSARIALLHYADG-----EKRYIIAPAGLEVGQTVVSGPDADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMA--KEGKYANIRMPSGEMRLLLQECRATIGQV---GNVEHENITIGKAGRK 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 45/155 (29.03%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 +R++DF + +V + +DP R A +A + ++ ++ +A + + G V G + GNV+P+ ++P G +V NVE +G G LAR++G YA I+ D+D ++L SG ++++ CR IG V+ + KAG Sbjct: 62 YRNVDFKRGKEDVPAIVERLEYDPNRTAFIALIKYQDG-----EQAYILAPQRLAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DHDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIMB (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup B GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG Sbjct: 30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIM0 (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG Sbjct: 30 YAPLLEKKNSTAGRNSNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEAAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIG2 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG Sbjct: 30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAG 209 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |