FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRSY (50S ribosomal protein L2 OS=Streptococcus suis (strain 05ZYH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            +R +DF      ++ +V  I +DP R A +A V +         K   IA +G+  GQ +  G +A + VGN LP+ +IP G VV N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G V   G  +  L+  G A
Sbjct:   62 YRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQHGLVNLGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRS2 (50S ribosomal protein L2 OS=Streptococcus suis (strain 98HAH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            +R +DF      ++ +V  I +DP R A +A V +         K   IA +G+  GQ +  G +A + VGN LP+ +IP G VV N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G V   G  +  L+  G A
Sbjct:   62 YRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQHGLVNLGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_STRE4 (50S ribosomal protein L2 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            +R +DF      ++ VV  I +DP R A +A V +         K   IA +G+  GQ +  G  A + VGN LP+ +IP G VV N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA +G V   G  ++ L+  G A
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIVSGPDADIKVGNALPLVNIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATVGTV---GNEQQSLVNIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SHEHH (50S ribosomal protein L2 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            +R +DF      +   V  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG
Sbjct:   62 YRLIDFKRNKDGIPAKVERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGIDAEIKSGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 56/190 (29.47%), Postives = 89/190 (46.84%), Query Frame = 1
Query:   85 GRVIRAQRKGAGSVFKSHTH------HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            GR  ++  KG       + H      HR G  +  +R +DF      +  VV  I +DP R A +A + +        Q    +A + +  G  V   + A + +GN LP++ IP G  V NVE  VG  G +AR++G    ++    D+   ++KL SG  ++IP  C+A IG ++   +    L KAG
Sbjct:   27 GRPFKSLTKGISKTGGRNNHGRITSWHRGGGHKKLYRIIDFKRNKIDISAVVERIEYDPNRTAFIALIKYEDG-----QYSYILAPQKLSVGDKVISSQDADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  145 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHK 645
            HR G  +  +R +DF      +   VA I +DP R A +A + +        +K   IA  G+  GQ V  G  A +  GN LP+++IP G ++ N+E +    G L R++G  A +++   +     +++PSG  +++   CRA IGQV   G  E   +  G A  K
Sbjct:   53 HRGGGHKRLYRIIDFKRDKDGIPAKVASIEYDPNRSARIALLHYADG-----EKRYIIAPAGLEVGQTVVSGPDADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMA--KEGKYANIRMPSGEMRLLLQECRATIGQV---GNVEHENITIGKAGRK 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NITHX (50S ribosomal protein L2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 45/155 (29.03%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  166 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            +R++DF      +  +V  + +DP R A +A + ++       ++   +A + +  G  V  G    +  GNV+P+ ++P G +V NVE  +G  G LAR++G YA I+    D+D   ++L SG ++++   CR  IG V+        + KAG
Sbjct:   62 YRNVDFKRGKEDVPAIVERLEYDPNRTAFIALIKYQDG-----EQAYILAPQRLAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGR--DHDYVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIMB (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup B GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            + P  + ++ +  +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG
Sbjct:   30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIM0 (50S ribosomal protein L2 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            + P  + ++ +  +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG
Sbjct:   30 YAPLLEKKNSTAGRNSNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEAAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIG2 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            + P  + ++ +  +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG
Sbjct:   30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAG 209          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRSY1.311e-1333.1250S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_STRS21.311e-1333.1250S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_STRE41.311e-1333.7650S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_SHEHH1.311e-1330.9750S ribosomal protein L2 OS=Shewanella halifaxensi... [more]
RL2_RICCK1.311e-1329.4750S ribosomal protein L2 OS=Rickettsia canadensis ... [more]
RL2_PELTS1.311e-1330.7750S ribosomal protein L2 OS=Pelotomaculum thermopr... [more]
RL2_NITHX1.311e-1329.0350S ribosomal protein L2 OS=Nitrobacter hamburgens... [more]
RL2_NEIMB1.311e-1327.7850S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIM01.311e-1327.7850S ribosomal protein L2 OS=Neisseria meningitidis... [more]
RL2_NEIG21.311e-1327.7850S ribosomal protein L2 OS=Neisseria gonorrhoeae ... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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