FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIG1 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 + P + ++ + + I + KG G H HH +R +DF + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G + +E G +AR++G AV+++ + +V+L SG + I CRA IG+V ++ K + KAG Sbjct: 30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_LEUCK (50S ribosomal protein L2 OS=Leuconostoc citreum (strain KM20) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 1 Query: 142 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKR 660 HH G Q +R +DF V I +DP R A +A + + K +A +G+ G V G A + VGN LP+ +IPEG ++ N+E G G LAR++G A I+ D V+L SG +++ + RA IG+V G E L+ G A +++R KR Sbjct: 53 HHAGGHKQAYRLVDFKRIKDNTTATVKAIEYDPNRTANIALLVYEDGI-----KSYILAPKGLKVGDKVQSGPDADIKVGNALPLSNIPEGTLIHNIELKPGKGGQLARSAGTSAQIL--GKDGKYVIVRLTSGEVRLVLATNRATIGEV---GNAEHSLINWGKAGRNRWRGKR 217
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_GEOSM (50S ribosomal protein L2 OS=Geobacter sp. (strain M21) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 1 Query: 163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 ++R +DF + VA I +DP R A +A + + +K +A + G V ++A + GN LP+R IP G ++ N+E +G LAR++G +A +++ + +VKLPSG ++I C+A IGQV + KAG + Sbjct: 61 KYRIIDFRRDKTEIPAKVATIEYDPCRSARIALLNYADG-----EKRYILAPLSLKVGDTVISSEQADIKPGNALPIRCIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEGKYGQVKLPSGEVRMILMDCKATIGQVGNVDHENVSIGKAGRS 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_EXISA (50S ribosomal protein L2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 55/165 (33.33%), Postives = 78/165 (47.27%), Query Frame = 1 Query: 142 HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 H RK +R +DF + G VA I +DP R A +A + + +K +A +G+ G + G +A + VGN LP+ +IP G + N+E G G L RA+G A I D V+L SG ++ CRA IG V G E L+ G A Sbjct: 58 HKRK----YRIIDFKRNKDGVAGRVATIEYDPNRSANIALINYVDG-----EKRYILAPKGIKVGMEIMSGPEADIKVGNALPLVNIPVGTTIHNIELKPGKGGQLVRAAGASAQI--QGRDGKYVIVRLQSGESRLFLGTCRATIGSV---GNEEHELVNIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_DEHSC (50S ribosomal protein L2 OS=Dehalococcoides sp. (strain CBDB1) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 53/166 (31.93%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 145 HRKGPA--QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 HR G + Q R +DF + G VA I +DP R A +A V + +K +A + G + G+ A GN LP+ SIP G + N+E G G++ R++G A +++ ++D V+LPSG + + S C A +GQ+ G E L+ G A Sbjct: 53 HRGGGSKTQIRVIDFKRNKLDVPGRVAAIEYDPNRTARIALVFYTDG-----EKRYILAPSDLKVGDVIMAGENAEPKSGNALPLSSIPTGTFIHNIEIIKGKGGIMVRSAGAAAQLMA--KEDDYALVRLPSGEMRKVRSDCSATVGQI---GNIEHGTLEIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_DEHSB (50S ribosomal protein L2 OS=Dehalococcoides sp. (strain BAV1) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 53/166 (31.93%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 145 HRKGPA--QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636 HR G + Q R +DF + G VA I +DP R A +A V + +K +A + G + G+ A GN LP+ SIP G + N+E G G++ R++G A +++ ++D V+LPSG + + S C A +GQ+ G E L+ G A Sbjct: 53 HRGGGSKTQIRVIDFKRNKLDVPGRVAAIEYDPNRTARIALVFYTDG-----EKRYILAPSDLKVGDVIMAGENAEPKSGNALPLSSIPTGTFIHNIEIIKGKGGIMVRSAGAAAQLMA--KEDDYALVRLPSGEMRKVRSDCSATVGQI---GNIEHGTLEIGKA 208
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BLOFL (50S ribosomal protein L2 OS=Blochmannia floridanus GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = 1 Query: 163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 ++R +DF + VV + +DP R A +A + ++ ++ +A + G + G + GN LP+ +IP G+++ NVE VG G LAR++G Y I+S D + ++L SG + + CRA IG+V + L KAG Sbjct: 63 RYRIIDFKRNKDDVFAVVERMEYDPNRSANIALIVYKDG-----ERRYILAPRNLNVGNKIISGLNVPISPGNSLPLSNIPVGSIIHNVEMKVGKGGQLARSAGTYVQIVSR--DGEYIILRLRSGEIRKVRCECRATIGEVGNNEHMLRALGKAG 211
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ANATD (50S ribosomal protein L2 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 53/164 (32.32%), Postives = 79/164 (48.17%), Query Frame = 1 Query: 145 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 HR G + R +DF + V I +DP R A LA + + ++ IA EG+ G V G A + VGN LP+++IP G ++ N+E G G L R++G A +++ + +KLPSG + + CRA IGQV + KAG Sbjct: 54 HRGGGHKKKIRIVDFKRDKDGIPAKVEAIEYDPNRTAFLALLCYADG-----ERRYIIAPEGLKVGDTVMSGPDADIKVGNALPLKNIPVGTMIHNIELMPGKGGQLCRSAGSVAQLMA--KEGKYALIKLPSGELRYVSQECRATIGQVGNLDHENVRIGKAG 210
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ALKOO (50S ribosomal protein L2 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 53/175 (30.29%), Postives = 82/175 (46.86%), Query Frame = 1 Query: 112 GAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 G S + HR G + +R +DF + VA I +DP R A +A + + +K IA +G+ G V G A + GN LP+ +IP G ++ N+E G L RA+G+ A +++ + V+LPS + +P C+A IGQV + KAG Sbjct: 42 GRNSYGRITVRHRGGAQKRHYRIIDFKRNKDGVPAKVATIEYDPNRSANIALLHYVDG-----EKRYIIAPQGLKVGDMVESGPNADIKTGNALPLANIPVGTMIHNIEMKPGKGAQLVRAAGNSAQLMA--KEGKHALVRLPSTEVRYLPIDCKATIGQVGNQEHENITIGKAG 209
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 57/193 (29.53%), Postives = 90/193 (46.63%), Query Frame = 1 Query: 64 LSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630 L K ++ A+++ G H T H G +R +DF + VV I +DP R A +A + + ++ IA +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D V+L SG + I CRA+IG+V+ + L KAG Sbjct: 24 LHKGKPFAALVEAKKRTGGRNNNGHITTRHVGGGHKQHYRLVDFKRNKDGIPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAG 209 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |