FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NEIG1 (50S ribosomal protein L2 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   37 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            + P  + ++ +  +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G  +  +E   G    +AR++G  AV+++   +    +V+L SG  + I   CRA IG+V    ++ K + KAG
Sbjct:   30 YAPLLEKKNSTAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGISAKVERIEYDPNRTAFIALLCYADG-----ERRYIIAPRGIQAGVVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLA--KEGAYAQVRLRSGEVRKINVDCRATIGEVGNEEQSLKKIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_LEUCK (50S ribosomal protein L2 OS=Leuconostoc citreum (strain KM20) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 58/175 (33.14%), Postives = 86/175 (49.14%), Query Frame = 1
Query:  142 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKR 660
            HH  G  Q +R +DF          V  I +DP R A +A + +         K   +A +G+  G  V  G  A + VGN LP+ +IPEG ++ N+E   G  G LAR++G  A I+    D     V+L SG  +++ +  RA IG+V   G  E  L+  G A  +++R KR
Sbjct:   53 HHAGGHKQAYRLVDFKRIKDNTTATVKAIEYDPNRTANIALLVYEDGI-----KSYILAPKGLKVGDKVQSGPDADIKVGNALPLSNIPEGTLIHNIELKPGKGGQLARSAGTSAQIL--GKDGKYVIVRLTSGEVRLVLATNRATIGEV---GNAEHSLINWGKAGRNRWRGKR 217          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_GEOSM (50S ribosomal protein L2 OS=Geobacter sp. (strain M21) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V   ++A +  GN LP+R IP G ++ N+E  +G    LAR++G +A +++   +    +VKLPSG  ++I   C+A IGQV         + KAG +
Sbjct:   61 KYRIIDFRRDKTEIPAKVATIEYDPCRSARIALLNYADG-----EKRYILAPLSLKVGDTVISSEQADIKPGNALPIRCIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEGKYGQVKLPSGEVRMILMDCKATIGQVGNVDHENVSIGKAGRS 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_EXISA (50S ribosomal protein L2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 55/165 (33.33%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  142 HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            H RK    +R +DF      + G VA I +DP R A +A + +        +K   +A +G+  G  +  G +A + VGN LP+ +IP G  + N+E   G  G L RA+G  A I     D     V+L SG  ++    CRA IG V   G  E  L+  G A
Sbjct:   58 HKRK----YRIIDFKRNKDGVAGRVATIEYDPNRSANIALINYVDG-----EKRYILAPKGIKVGMEIMSGPEADIKVGNALPLVNIPVGTTIHNIELKPGKGGQLVRAAGASAQI--QGRDGKYVIVRLQSGESRLFLGTCRATIGSV---GNEEHELVNIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_DEHSC (50S ribosomal protein L2 OS=Dehalococcoides sp. (strain CBDB1) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 53/166 (31.93%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  145 HRKGPA--QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            HR G +  Q R +DF      + G VA I +DP R A +A V +        +K   +A   +  G  +  G+ A    GN LP+ SIP G  + N+E   G  G++ R++G  A +++   ++D   V+LPSG  + + S C A +GQ+   G  E   L+ G A
Sbjct:   53 HRGGGSKTQIRVIDFKRNKLDVPGRVAAIEYDPNRTARIALVFYTDG-----EKRYILAPSDLKVGDVIMAGENAEPKSGNALPLSSIPTGTFIHNIEIIKGKGGIMVRSAGAAAQLMA--KEDDYALVRLPSGEMRKVRSDCSATVGQI---GNIEHGTLEIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_DEHSB (50S ribosomal protein L2 OS=Dehalococcoides sp. (strain BAV1) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 53/166 (31.93%), Postives = 82/166 (49.40%), Query Frame = 1
Query:  145 HRKGPA--QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA 636
            HR G +  Q R +DF      + G VA I +DP R A +A V +        +K   +A   +  G  +  G+ A    GN LP+ SIP G  + N+E   G  G++ R++G  A +++   ++D   V+LPSG  + + S C A +GQ+   G  E   L+ G A
Sbjct:   53 HRGGGSKTQIRVIDFKRNKLDVPGRVAAIEYDPNRTARIALVFYTDG-----EKRYILAPSDLKVGDVIMAGENAEPKSGNALPLSSIPTGTFIHNIEIIKGKGGIMVRSAGAAAQLMA--KEDDYALVRLPSGEMRKVRSDCSATVGQI---GNIEHGTLEIGKA 208          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_BLOFL (50S ribosomal protein L2 OS=Blochmannia floridanus GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = 1
Query:  163 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            ++R +DF      +  VV  + +DP R A +A + ++       ++   +A   +  G  +  G    +  GN LP+ +IP G+++ NVE  VG  G LAR++G Y  I+S   D +   ++L SG  + +   CRA IG+V       + L KAG
Sbjct:   63 RYRIIDFKRNKDDVFAVVERMEYDPNRSANIALIVYKDG-----ERRYILAPRNLNVGNKIISGLNVPISPGNSLPLSNIPVGSIIHNVEMKVGKGGQLARSAGTYVQIVSR--DGEYIILRLRSGEIRKVRCECRATIGEVGNNEHMLRALGKAG 211          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ANATD (50S ribosomal protein L2 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 53/164 (32.32%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  145 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            HR G    + R +DF      +   V  I +DP R A LA + +        ++   IA EG+  G  V  G  A + VGN LP+++IP G ++ N+E   G  G L R++G  A +++   +     +KLPSG  + +   CRA IGQV         + KAG
Sbjct:   54 HRGGGHKKKIRIVDFKRDKDGIPAKVEAIEYDPNRTAFLALLCYADG-----ERRYIIAPEGLKVGDTVMSGPDADIKVGNALPLKNIPVGTMIHNIELMPGKGGQLCRSAGSVAQLMA--KEGKYALIKLPSGELRYVSQECRATIGQVGNLDHENVRIGKAG 210          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ALKOO (50S ribosomal protein L2 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 53/175 (30.29%), Postives = 82/175 (46.86%), Query Frame = 1
Query:  112 GAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            G  S  +    HR G  +  +R +DF      +   VA I +DP R A +A + +        +K   IA +G+  G  V  G  A +  GN LP+ +IP G ++ N+E   G    L RA+G+ A +++   +     V+LPS   + +P  C+A IGQV         + KAG
Sbjct:   42 GRNSYGRITVRHRGGAQKRHYRIIDFKRNKDGVPAKVATIEYDPNRSANIALLHYVDG-----EKRYIIAPQGLKVGDMVESGPNADIKTGNALPLANIPVGTMIHNIEMKPGKGAQLVRAAGNSAQLMA--KEGKHALVRLPSTEVRYLPIDCKATIGQVGNQEHENITIGKAG 209          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 57/193 (29.53%), Postives = 90/193 (46.63%), Query Frame = 1
Query:   64 LSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG 630
            L   K    ++ A+++  G     H  T H  G     +R +DF      +  VV  I +DP R A +A + +        ++   IA +G+  G  V  G  A +  GN LP+R++P G+ + NVE  +G    LAR++G    ++    D     V+L SG  + I   CRA+IG+V+      + L KAG
Sbjct:   24 LHKGKPFAALVEAKKRTGGRNNNGHITTRHVGGGHKQHYRLVDFKRNKDGIPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAG 209          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NEIG11.311e-1327.7850S ribosomal protein L2 OS=Neisseria gonorrhoeae ... [more]
RL2_LEUCK1.311e-1333.1450S ribosomal protein L2 OS=Leuconostoc citreum (s... [more]
RL2_GEOSM1.311e-1330.3850S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RL2_EXISA1.311e-1333.3350S ribosomal protein L2 OS=Exiguobacterium sp. (s... [more]
RL2_DEHSC1.311e-1331.9350S ribosomal protein L2 OS=Dehalococcoides sp. (s... [more]
RL2_DEHSB1.311e-1331.9350S ribosomal protein L2 OS=Dehalococcoides sp. (s... [more]
RL2_BLOFL1.311e-1330.1350S ribosomal protein L2 OS=Blochmannia floridanus... [more]
RL2_ANATD1.311e-1332.3250S ribosomal protein L2 OS=Anaerocellum thermophi... [more]
RL2_ALKOO1.311e-1330.2950S ribosomal protein L2 OS=Alkaliphilus oremlandi... [more]
RL2_ACIAD1.311e-1329.5350S ribosomal protein L2 OS=Acinetobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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