FC930224

Overview
NameFC930224
Unique NameFC930224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930224_ssr22 microsatellite FC930224_ssr22:22..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12665 contig Ccv1_Contig12665:14..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.144e-36
Identity = 82/200 (41.00%), Postives = 119/200 (59.50%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ I  QR+G G + F+S  H +  PA++        +  ++GV+ EI+H+PGR  P++ V   +      Q+  +I  EG+Y GQ +  GK A +  GNVLP+  IP+G++VCNVE   GD G +AR SG YA++ SH  + D   ++LPS  +K++ + CRA IG VAG GR EKP +KAG  Y+  R     WP V
Sbjct:    1 MGKRILVQRRGRGGIQFRSKDHLKIAPARYPQ---DGMDNLMRGVIKEILHEPGRHTPISLVELENG-----QEFYYIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSH--EGDKVILRLPSRKEKLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVV 190          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.330e-36
Identity = 87/200 (43.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   82 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGR I  QR+G G S F++ +H  K     R++   E +  + G V +I HDP R APLA V F    R      L +A EG+  G  +  G  A +  GN +P+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   V+LPSG  + +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+V
Sbjct:    1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNV---EESDLVTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRV 190          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.219e-35
Identity = 86/200 (43.00%), Postives = 117/200 (58.50%), Query Frame = 1
Query:   82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ I  QR+G  GS F+S +  R GP ++  L  G  +G  KG V +I+H+PG  AP+A++   +   +        AAEG+Y GQ V  GK A+   GN++ +  IPEG ++ NVE   GD G  ARA G YAV+I   P+ + T ++LPSG    + S  RA +G VAGGGR EKP LKAG  YH+ R K   +P V
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPL--GVISG--KGYVVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTV 191          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.592e-35
Identity = 85/200 (42.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query:   82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ I  QR+G  GS F+S +  R GP ++     G      +G+V EI+H+PG  AP+A++   +   +        AAEG+Y GQ +  G  A   VGNVLP+  IPEG +V NVE   GD G  AR+ G YA++I   P+ + T V+LPSG    + +  RA IG VAGGGR EKP +KAG  YH+ R K   +P V
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPNISG------RGIVVEILHEPGLNAPVAKIRMENGVEFFNY-----AAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTV 189          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.592e-35
Identity = 86/200 (43.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MGR I+ QR+G G   F++ +H  K     + L+  +    + G +  I HDP R APLA + F    R      L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE + GD G  ARASG  A +++H  D D   V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN YHK + +   +P+V
Sbjct:    1 MGRRIQGQRRGRGGPTFRAPSHRYKAELSHKKLEDVDT---ITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTH--DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRV 190          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.079e-35
Identity = 86/201 (42.79%), Postives = 123/201 (61.19%), Query Frame = 1
Query:   82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGE-RNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ +  QR+G  GSVF++    R GPA++   +  E +N  L GVV +++H+PGRGAPLA V F         K   I  EG+  GQ +Y G KA  ++G+++ + ++PEG +V N+E   GD G LAR+SG YA++++H+  N  T ++LPS   K + S  RA IG VA GGR EKP+LKAG  +H  R K   +P V
Sbjct:    1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFEDG-----TKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTV 194          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.631e-35
Identity = 82/200 (41.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ I  QR+G  GS F+S +  R GP ++  L+     GY    V E++H+PG  AP+AR+       +        AAEG+Y GQ +  G  AT   GN++ +  IPEG ++ NVE   GD G  AR+SG YAV++   P+ + T ++LPSG    + +  RA +G VAGGGR EKP LKAG  YH+ R K   +P V
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTV 191          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.048e-35
Identity = 79/199 (39.70%), Postives = 113/199 (56.78%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ + +Q +G GS     T  R          FG+    ++G++ E++HDP R  P+ RV F +      ++ L +A EG+  G  + CG  A +  GN LP+  IPEG  +CN+E   GD G  AR+SG YA+I++H  +   T V++PSG  K +   CRA IG VAGGGRTEKP ++AGN ++K   K   WP V
Sbjct:    1 MGKRLMSQNRGKGSPTYRATSSRFKADLEHIKTFGDET--IEGIITEVVHDPARNCPIIRVKFGNG-----EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVV 190          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.048e-35
Identity = 88/201 (43.78%), Postives = 118/201 (58.71%), Query Frame = 1
Query:   82 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ +  QR+G GS +++S       PA++  L        L+G V E++HDPGR  PLA +   +        E +I AAEGMY GQ +  G  A  + GN+LPV  IPEG  V N+E   GD G L RA G YA+I+  +   + T ++LPSG  K +P+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+V
Sbjct:    1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLT----PVTLRGRVVELVHDPGRWVPLAHIVLENG------DEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRV 189          
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.899e-35
Identity = 82/200 (41.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678
            MG+ I  QR+G  GS F+S +  R GP ++  L+     GY    V EI+H+PG  AP+AR+   +   ++       AAEG+Y GQ +  G  A    GN++ +  +PEG +V NVE   GD G  ARA G YAV++   P+ + T ++LPSG    + S  RA +G VAGGGR EKP LKAG  YH+ + K   +P V
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLNVTVGRGY----VVEILHEPGLNAPVARIRLENGVEFLN-----FAAEGLYVGQEIEVGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEENKTIIRLPSGKVVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRAKAKAWKYPTV 191          
The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_KORCO7.144e-3641.0050S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_NATPD9.330e-3643.5050S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_PYRAE1.219e-3543.0050S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_PYRCJ1.592e-3542.5050S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_HALLT1.592e-3543.0050S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_THEPD2.079e-3542.7950S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RL2_PYRAR4.631e-3541.0050S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]
RL2_UNCMA6.048e-3539.7050S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_HYPBU6.048e-3543.7850S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_PYRIL7.899e-3541.0050S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionC34005B04EF PostHarvC1 Citrus clementina cDNA clone C34005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bp
GGCATCTTCCCAATCACACACATATATATATATATTCATCAGCCTGCCGC
ACAAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCG
CACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGT
AAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTA
CCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCC
CGCTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAG
GAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTG
CGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTA
TCCCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGC
GGTGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAA
CCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGA
TTATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGG
AGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAG
AGTGAAGCGAAACTGCTGGCCTAAGGTG
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