FC930224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34 Identity = 80/193 (41.45%), Postives = 114/193 (59.07%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGSVFKSHTHHR-KGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVK 657 MG+ + QR+G G+ HR K ++RS D E+ G +KG+V +I+HDP R AP+A V F + +K+ +A E + + CG A + GN LP+ IPEG + ++E+ GD G R+SG YA +I+H D + + V+LPSG K + CRA IG VAGGGR EKP LKAGN +H ++ K Sbjct: 1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAK 186
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.298e-34 Identity = 82/199 (41.21%), Postives = 118/199 (59.30%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPK 675 MG+ + QR+G G+ F++ +H +G ++ L+ + L G V EI+HDPGR AP+ARV F + ++L IA EG+ G+ + G A + +GN LP+ IPEG+ V ++E GD G RA G YA+++S + D V+LPSG K CRA IG VAGGGR EKP++KAG AY+ + + WPK Sbjct: 1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKT-LVGKVVEILHDPGRTAPVARVKFENGM-----EKLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPK 191
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.001e-34 Identity = 83/200 (41.50%), Postives = 118/200 (59.00%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ +R QR G G+ +++ H R P ++ S + + + +G V E+ HDPGR PLA + + + AAEGMYTGQ V G A + GN+LP+ +IPEG + NVE GD G LAR+ G YA+++ + ++ ++LPSG K + + RA IG AG GR EKPLLKAGNAY+K++ K WP V Sbjct: 1 MGKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFW-----IPAAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVV 193
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.120e-34 Identity = 82/201 (40.80%), Postives = 116/201 (57.71%), Query Frame = 1 Query: 82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ I QR G GS F+S + R P ++ + ++G++ E++H G AP V + +E+++ A EG+Y G+ + G A + GNV+P+ IPEG +VCN+E VGD G AR+SG Y V++ H + TT V+LPSG + S RA IG VAGGGR EKP +KAGN YH+ R K +PKV Sbjct: 1 MGKKILVQRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVLENG------EEMYLPAVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKV 193
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.945e-33 Identity = 76/201 (37.81%), Postives = 119/201 (59.20%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ + +Q +G G+ +++ +H K + +D N L+G V +I HDP R AP+A+V F + +ELF+ A+EG+ G + CG A + GN++P+ ++PEG +CN+E D G R+SG YA +++H P T V +PSG K + CRA++G VAGGGR ++P LKAG YHK + + +P+V Sbjct: 1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENTSLQGEVIDIEHDPARSAPIAKVAFENG------EELFLLASEGVAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNIESKPNDGGKFVRSSGVYATVVTHEPTR--TAVSMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRV 190
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33 Identity = 80/200 (40.00%), Postives = 115/200 (57.50%), Query Frame = 1 Query: 82 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ I QR+G GS F+S + R+GP ++ L R G V +IIH PG AP+A++ + ++ AAEG+Y GQ + G+ A+ GNV+ + PEG +V NVE GD G AR+ G YAV++ P+ + T V+LPSG + + RA +G VAGGGR EKP++KAG Y++ R K +P V Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAGR-----GYVVDIIHVPGLNAPVAKIRLENGLEFLNY-----AAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLV 190
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.809e-32 Identity = 72/200 (36.00%), Postives = 117/200 (58.50%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ I +Q +G G+ +++ +H K + +D N ++G V + HDP R AP+A+V F ++ L +A+EG+ G + CG A + GN++P+ +PEG +CN+E D G R+SG YA +++H +++ T V +PSG K + CRA++G VAGGGR ++P LKAG YHK + + +P+V Sbjct: 1 MGKRIISQNRGRGTPTYRAPSHKYKAELRHPRVD---ENTSIQGKVINLEHDPARSAPIAKVVFE-----TGEERLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRV 190
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32 Identity = 75/201 (37.31%), Postives = 117/201 (58.21%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ + +Q +G G+ +++ +H K + +D N L+G V I HDP R AP+A+V F + +ELF+ A+EG+ G + CG A + GN++P+ ++PEG +CNVE D G R+SG YA +++H + T V +PSG K + CRA++G VAG GR ++P LKAG YHK + + +P+V Sbjct: 1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAFENG------EELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH--EATRTAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRV 190
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31 Identity = 77/200 (38.50%), Postives = 115/200 (57.50%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ + QR G GS F+S + R G ++ ++ G+L G V +I+H+PG AP+A + + +++ Q A +G+ Q + GK + + GNV+ + PEG +VCNVE + GD G AR++G YAV++ + D +KLPS K + + RA +G VAGGG EKPLLKAG Y K++VK WP V Sbjct: 1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIV 188
BLAST of FC930224 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31 Identity = 77/200 (38.50%), Postives = 115/200 (57.50%), Query Frame = 1 Query: 82 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKV 678 MG+ + QR G GS F+S + R G ++ ++ G+L G V +I+H+PG AP+A + + +++ Q A +G+ Q + GK + + GNV+ + PEG +VCNVE + GD G AR++G YAV++ + D +KLPS K + + RA +G VAGGG EKPLLKAG Y K++VK WP V Sbjct: 1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIV 188 The following BLAST results are available for this feature:
BLAST of FC930224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930224 ID=FC930224; Name=FC930224; organism=Citrus clementina; type=EST; length=678bpback to top |