FC930229

Overview
NameFC930229
Unique NameFC930229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            HYRGVR+RPWGK+AAEIRDP + G RVWL T++T            +++RGSKA+ +FP
Sbjct:   98 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 156          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            HYRGVR+RPWGK+AAEIRDP + G RVWL T++T            +++RGSKA+ +FP
Sbjct:  102 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            YRGVRRRPWGK+AAEIRDP + G RVWL T++T            FQLRGSKA  +FP
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            YRGVR+RPWGK+AAEIRD TR+G+RVWL TFDT            F L+GS A+ +FP
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            HYRGVRRRPWGK+AAEIRDP + G RVWL T++T            +++RGSKA  +FP
Sbjct:  104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFP 162          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            YRGVRRRPWGKYAAEIRD  R G RVWL TF+T            F++RG+KA+ +FP
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            HYRGVR+RPWGK+AAEIRDP + G RVWL T+++            F++RG+KA+ +FP
Sbjct:  106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            +RGVRRRPWGK+AAEIRDP+R G R+WL TF+T            F LRG  AI +FP
Sbjct:   20 FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHF 702
            YRGVRRRPWGK+AAEIRD TR G+RVWL TF++            F +RGS AI +F
Sbjct:   82 YRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138          
BLAST of FC930229 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDTXXXXXXXXXXXXFQLRGSKAIPHFP 705
            YRGVR+RPWGKYAAEIRD  R G RVWL TF+T            F +RG +AI +FP
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
The following BLAST results are available for this feature:
BLAST of FC930229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ERF2_TOBAC2.434e-1354.24Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY2.434e-1354.24Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF99_ARATH3.179e-1360.34Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF94_ARATH3.179e-1358.62Ethylene-responsive transcription factor ERF094 OS... [more]
ERF1_TOBAC3.179e-1355.93Ethylene-responsive transcription factor 1 OS=Nico... [more]
PTI5_SOLLC4.152e-1358.62Pathogenesis-related genes transcriptional activat... [more]
ERF1_SOLLC7.082e-1352.54Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF98_ARATH3.515e-1256.90Ethylene-responsive transcription factor ERF098 OS... [more]
ERF92_ARATH3.515e-1257.89Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF95_ARATH4.591e-1256.90Ethylene-responsive transcription factor ERF095 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34005B09EF PostHarvC1 Citrus clementina cDNA clone C34005B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930229 ID=FC930229; Name=FC930229; organism=Citrus clementina; type=EST; length=709bp
GGTACTCAAAACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGA
CACAGCTTGCTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCG
AGTTTATCGAGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTT
AGTTCGAGTTTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTC
TGCATCTTCAGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATG
AATCCAAACCTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACT
TGCTCTGAATTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAAT
CCAATCGCAACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAA
TATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATC
TCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAA
GGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGA
GGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGC
GTACGTGTCTGGCTGGNGACATTTGACACGGCCATTGAAGCAGCTAGGGC
GTACGACCGTGCCGCTTTCCAGCTACGCGGCTCGAAAGCGATCCCTCACT
TTCCTCTTG
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