FC930231

Overview
NameFC930231
Unique NameFC930231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930231 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.730e-34
Identity = 78/210 (37.14%), Postives = 118/210 (56.19%), Query Frame = 1
Query:  100 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGST 723
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGIT 211          
BLAST of FC930231 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 71/189 (37.57%), Postives = 110/189 (58.20%), Query Frame = 1
Query:  163 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGST 723
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N    ++ VDE TI +  ILG T
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGIT 209          
The following BLAST results are available for this feature:
BLAST of FC930231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO5.730e-3437.14Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO1.321e-3037.57Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionC34005B11EF PostHarvC1 Citrus clementina cDNA clone C34005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930231 ID=FC930231; Name=FC930231; organism=Citrus clementina; type=EST; length=723bp
GCTCTTTCCTTTGTGTCTCAACAATTTCTATTCATTTCTCTCAGACTCAA
GAGCCTCTCTTCTCTGCAAAAAACAAAAACAAAAATGGTGATTTCAACAA
CAGAAACAGACTCCAGGGAGATTTTGAGCTCCACATTTGCTTCAAGATAT
GTCCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAA
GGAGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATC
CAAGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGT
GATAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGA
ATACCCTGTAACCACAGAGCTCCAGAATCGGTGTGTGAATATGATTGCCC
ACCTATTTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGG
ACTGTAGGTTCATCAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAG
GAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCA
ATATAGTCACTGGAGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGG
TACTTTGAGGTTGAGCTGAAGGAGGTGAAACTGGAAGAGGGATATTATGT
GATGAATCCTGTGAAAGCTGTTGAGTTGGTAGATGAGAACACCATTTGTG
TTGCAGCCATTCTGGGATCAACC
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