FC930234

Overview
NameFC930234
Unique NameFC930234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930234_ssr119 microsatellite FC930234_ssr119:119..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11452 contig Ccv1_Contig11452:70..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 100/179 (55.87%), Postives = 127/179 (70.95%), Query Frame = 2
Query:  152 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCH  E IE   LLHRAFSVFLFN++ +LLLQQRS  K+T P  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSK 176          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.234e-47
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 2
Query:  173 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            + +D  Q +L+ E  CIL+DEND  +G + K NCH  E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++
Sbjct:    7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSK 176          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.234e-47
Identity = 93/170 (54.71%), Postives = 125/170 (73.53%), Query Frame = 2
Query:  179 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            +D  Q +L+ E  CIL+DEND  +G + K NCH  E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++
Sbjct:    9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSK 176          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.057e-46
Identity = 93/170 (54.71%), Postives = 124/170 (72.94%), Query Frame = 2
Query:  179 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            +D  Q +L+ E  CIL+DEND  +G + K NCH  E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++
Sbjct:    9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSK 176          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.526e-41
Identity = 92/170 (54.12%), Postives = 113/170 (66.47%), Query Frame = 2
Query:  182 DAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYV 682
            D  Q RLM E+ CI+VDEND  + +  K  CH ME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G WGEHE+DY+LF    V ++ NP+EV  Y YV
Sbjct:   11 DEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYV 178          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 91/171 (53.22%), Postives = 111/171 (64.91%), Query Frame = 2
Query:  182 DAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            D  Q RLM E+ CILV+ +D   G  +K  CH M  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG WGEHE+DY+LF         NP+EV++  YV +
Sbjct:   23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTK 192          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.203e-40
Identity = 86/176 (48.86%), Postives = 120/176 (68.18%), Query Frame = 2
Query:  167 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYVNR 688
            +D  +D V RR +   E+  I+VDEND+V+G + K NCH  E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y+++
Sbjct:    2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQ 176          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.999e-38
Identity = 85/175 (48.57%), Postives = 124/175 (70.86%), Query Frame = 2
Query:  176 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYXYVNR 688
            G + +Q  LM ++ECI+VD +D+ +   +K   H M  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S  D +WGEHE+D++L + +D +++N  P+EV +Y YV++
Sbjct:   15 GHNEIQIELM-KEECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQ 187          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 87/184 (47.28%), Postives = 117/184 (63.59%), Query Frame = 2
Query:  164 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYXYVN 685
            T  +G D  Q +LM E+ CI++D +D  +G   K  CH ME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+  WGEHE+DY+LF       +++VNPN +EV ++ +V+
Sbjct:   57 TCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVS 238          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_ERWCT (Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica GN=idi PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 61/156 (39.10%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  215 ECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXY 679
            E +LVDEND+  G   K   H          LHRA +V++FNS+ +LLLQQR+  K     +W+NTCCSHP   E  L          AA R+L +E+G+ CA        TP+  + Y+   D    EHEL ++ F V D     NPDEV+ Y Y
Sbjct:    5 EVVLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYRLQLDNGLIEHELGHVYFGVTDDVPQINPDEVSSYEY 138          
The following BLAST results are available for this feature:
BLAST of FC930234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IDI1_PONAB6.395e-4855.87Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_RAT9.234e-4753.49Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_MOUSE9.234e-4754.71Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_MESAU2.057e-4654.71Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_SCHPO1.526e-4154.12Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI1_PHARH4.439e-4153.22Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI2_HUMAN2.203e-4048.86Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI_DICDI5.999e-3848.57Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI1_YEAST1.251e-3547.28Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_ERWCT1.257e-1939.10Isopentenyl-diphosphate Delta-isomerase OS=Erwinia... [more]

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Properties
Property NameValue
Genbank descriptionC34005C02EF PostHarvC1 Citrus clementina cDNA clone C34005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930234 ID=FC930234; Name=FC930234; organism=Citrus clementina; type=EST; length=689bp
AATCAACAACTCTTCTTCTTTCTCGAAGTCCCGTCTATTTTTCTCCTCTT
CCCATTTCGCCCCTAGGGTTTCTTCGATTCGCAGGCCTCTGTCCTTGAGA
GGTGCCTCTCGTTCTAGCTCTTCTTCTTCTTCCGCTCGCGCAATCAGCAC
TATGGGTGACGCTACTACTGATGCCGGCATGGACGCTGTCCAGCGCCGCC
TCATGTTTGAAGACGAATGCATTTTGGTGGATGAGAATGATCGCGTTGTT
GGTCATGAAAACAAATACAACTGTCACTCGATGGAAAGGATTGAGTCTTT
GAATTTGCTACACAGAGCCTTCAGCGTATTTTTGTTTAACTCAAAATATG
AGCTACTCCTTCAGCAACGCTCTGGAACCAAAGTTACCTTCCCTCTTGTG
TGGACTAACACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTTAT
TGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTTGG
ATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTCCA
CTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAGCA
TGAACTTGACTACTTACTTTTCATTGTCCGAGATGTTAGTGTTAACCCAA
ATCCTGATGAAGTAGCCGAGTATNAATATGTCAACCGGG
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