FC930234

Overview
NameFC930234
Unique NameFC930234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_STRCO (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor GN=idi PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 53/155 (34.19%), Postives = 73/155 (47.10%), Query Frame = 2
Query:  224 LVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYXYVN 685
            LVDEN   +G   K + H     +    LHRAFSVFLF+ +  LL+QQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P       E E ++L   +    + P+P+EVA   +V+
Sbjct:   24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTFEELG-----VSPSLLAEAGTVRYNHPDPASGLVEQEYNHLFVGLVQAELRPDPEEVAGTAFVS 159          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_STRGG (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 52/154 (33.77%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  224 LVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK-WGEHELDYLLFIVRDVSVNPNPDEVAEYXYV 682
            LVDEN   +G   K   H     ++   LHRAFSVFLF+ +  LLLQ+R+  K   P VW+NTCC HP   E+            AA R+  +ELG+             G + Y  P       E E ++L   +   +  P+P+EV E  +V
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QAPGQLHRAFSVFLFDEQGRLLLQRRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELGLSP-----SLLAEAGTVRYNHPDPASGLVEQEFNHLFVGLAQTAPKPDPEEVGETAFV 158          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_SACEN (Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=idi PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 48/152 (31.58%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  212 DECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 667
            ++ +L++++ + +G  +K   H ++       LH AFS ++FN + +LLL QR+  K T+P VWTNTCC HP  +E+         +  A  R+L +ELG+   D+ +     L R  Y+A       E+E+  +     D    PN +EVA
Sbjct:    2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTWPGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTL----VLPRFRYRAVMGNGVVENEICPVFAAFTDDEPAPNREEVA 135          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_HALHL (Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=idi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 54/150 (36.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  212 DECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYL-LFIVRDVSVNPNPD 658
            +  ++VD   + VG E K   H+         LH AF VF+FN + ELLLQ+R+ +K  F  +W+NTCC HP   E         GV  AA+R+L +E G      PV +FT      Y A  D   G  E +Y  + I R  +  P PD
Sbjct:    2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHFSGLWSNTCCGHPRPGE---------GVTEAAERRLGEEFGFVTRLHPVAQFT------YHA-EDHHTGLAEYEYAHVLIGRAPTDQPAPD 130          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_STRAW (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis GN=idi PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 52/154 (33.77%), Postives = 71/154 (46.10%), Query Frame = 2
Query:  224 LVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS-DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYXYV 682
            LVDEN   +G   K   H     +    LHRAFSVFLF+ +  LLLQQR+  K   P VW+NTCC HP   E+            AA R+  +ELG     V        G + Y  P  D    E E ++L   +    + P+ +E+ +  +V
Sbjct:   24 LVDENGTTIGTAEKLAAH-----QPPGQLHRAFSVFLFDEQGRLLLQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTHEELG-----VSPSLLAEAGTVRYNHPDPDSGLVEQEFNHLFVGLVQSPLRPDAEEIGDTAFV 158          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_KLEP7 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=idi PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 2
Query:  203 MFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV-PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYXYVN 685
            M  +  IL+DE D+  G   KY  H+ +       LH AFS +LFN + +LL+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+   D+ PV    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y +V+
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTFD-----TPLHLAFSCWLFNQQGQLLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGVEISDIAPVH---PAFR--YRAVAPNGIVENEV-CPVYAARVVSEVQPNDDEVMDYQWVD 143          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_KLEP3 (Isopentenyl-diphosphate Delta-isomerase OS=Klebsiella pneumoniae (strain 342) GN=idi PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  203 MFEDECILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYXYVN 685
            M  +  IL+DE D+  G   KY  H+++       LH AFS +LFN + + L+ +RS  K  +P VWTN+ C HP  ++ E  E+       A  R+   ELG+  E   +    P  R  Y+A +     E+E+   ++  R VS V PN DEV +Y +V+
Sbjct:    1 MAGEHVILLDEQDQPAGMLEKYAAHTLD-----TPLHLAFSCWLFNQQGQFLVTRRSLGKKAWPGVWTNSVCGHP--QQGETFEQ-------AVTRRCRFELGV--EIADIAPIHPAFR--YRAVAPNGIVENEV-CPVYAARVVSQVQPNDDEVMDYQWVD 143          
BLAST of FC930234 vs. ExPASy Swiss-Prot
Match: IDI_MYCVP (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=idi PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  221 ILVDENDRVVGHENKYNCHSMERIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYXYV 682
            +L+D++ R +G   K   H      +   LH AFS +LF+    +LL +R+  K TFP +WTNTCC HP   E+         +++A  R++ +ELG+   D+       L    Y+A +     E+E+   +F  R V  V+P+ DEVA++ +V
Sbjct:   11 VLLDDDGRTIGSAPKAQVH-----HASTPLHLAFSCYLFDDAGRVLLTRRAVHKRTFPGIWTNTCCGHPAPGEA---------LQDAVTRRVREELGVGITDLR----CVLPDFRYRAVAADGVVENEV-CPVFCGRAVGQVHPDRDEVADHVWV 146          
The following BLAST results are available for this feature:
BLAST of FC930234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
IDI_STRCO2.296e-1334.19Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_STRGG5.114e-1333.77Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_SACEN5.114e-1331.58Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_HALHL1.139e-1236.00Isopentenyl-diphosphate Delta-isomerase OS=Halorho... [more]
IDI_STRAW3.315e-1233.77Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_KLEP79.645e-1235.58Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]
IDI_KLEP32.806e-1133.95Isopentenyl-diphosphate Delta-isomerase OS=Klebsie... [more]
IDI_MYCVP8.165e-1132.26Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionC34005C02EF PostHarvC1 Citrus clementina cDNA clone C34005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930234 ID=FC930234; Name=FC930234; organism=Citrus clementina; type=EST; length=689bp
AATCAACAACTCTTCTTCTTTCTCGAAGTCCCGTCTATTTTTCTCCTCTT
CCCATTTCGCCCCTAGGGTTTCTTCGATTCGCAGGCCTCTGTCCTTGAGA
GGTGCCTCTCGTTCTAGCTCTTCTTCTTCTTCCGCTCGCGCAATCAGCAC
TATGGGTGACGCTACTACTGATGCCGGCATGGACGCTGTCCAGCGCCGCC
TCATGTTTGAAGACGAATGCATTTTGGTGGATGAGAATGATCGCGTTGTT
GGTCATGAAAACAAATACAACTGTCACTCGATGGAAAGGATTGAGTCTTT
GAATTTGCTACACAGAGCCTTCAGCGTATTTTTGTTTAACTCAAAATATG
AGCTACTCCTTCAGCAACGCTCTGGAACCAAAGTTACCTTCCCTCTTGTG
TGGACTAACACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTTAT
TGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTTGG
ATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTCCA
CTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAGCA
TGAACTTGACTACTTACTTTTCATTGTCCGAGATGTTAGTGTTAACCCAA
ATCCTGATGAAGTAGCCGAGTATNAATATGTCAACCGGG
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