FC930237

Overview
NameFC930237
Unique NameFC930237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.231e-37
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR-GK-YYGRGPIQLSWNYITYG 641
            K +L  F  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC  GK YYGRGP+QLSWNY  YG
Sbjct:   54 KRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNY-NYG 126          

HSP 2 Score: 80.8777 bits (198), Expect = 3.231e-37
Identity = 35/57 (61.40%), Postives = 48/57 (84.21%), Query Frame = 2
Query:  278 KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            KIISR MF+ +L++RN+  CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAF 60          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.212e-35
Identity = 47/117 (40.17%), Postives = 59/117 (50.43%), Query Frame = 2
Query:  110 CGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            CGS      CP   CCS  G+CGLT  YCC GC S C                         +  MFE +L  RN+  CP + FYTYDA+  A + +P FG +G++  RKRE+AAFF
Sbjct:   26 CGSQAGNATCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNC--------------------FFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFF 122          

HSP 2 Score: 74.3294 bits (181), Expect = 2.212e-35
Identity = 37/75 (49.33%), Postives = 44/75 (58.67%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP----NYPCRGKYYGRGPIQLSWNYITYG 641
            K +L  FFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC   YYGRGP+QL WNY  YG
Sbjct:  115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNY-NYG 187          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.982e-33
Identity = 46/75 (61.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYITYG 641
            K ++  F AQT HETTGGW  AP G +AWGYCF +E G ASSDYC P+  +PC    +YYGRGPIQLS NY  YG
Sbjct:   77 KREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNY-NYG 149          

HSP 2 Score: 72.0182 bits (175), Expect = 1.982e-33
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 2
Query:  266 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            G +  I+SR  F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF
Sbjct:   23 GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 83          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.137e-32
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCR--GKYYGRGPIQLSWNYITYG 641
            K  +  F AQT HETTGGW  AP G +AWGYCF +E GAA +DYC P+  +PC    +YYGRGPIQLS NY  YG
Sbjct:   77 KRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAA-ADYCTPSAQWPCAPGKRYYGRGPIQLSHNY-NYG 149          

HSP 2 Score: 70.4774 bits (171), Expect = 2.137e-32
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  266 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            G +  IIS   F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF
Sbjct:   23 GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAF 83          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.003e-31
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  432 EKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPCR--GKYYGRGPIQLSWNYITYGA 644
            +++  F AQT HETTGGW  AP G Y+WGYC+NRE G +  DYC     +PC    KY+GRGPIQ+S+NY  YGA
Sbjct:   58 KEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQG-SPGDYCASSQQWPCAPGKKYFGRGPIQISYNY-NYGA 130          

HSP 2 Score: 68.1662 bits (165), Expect = 3.003e-31
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  272 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            +  +IS+ +FE +L +RND+ C A+ FYTY+AFI A K F AFG +G+   R +EIAAF
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAF 63          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.082e-27
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  248 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            G +G    +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF
Sbjct:   19 GASGQQAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFF 85          

HSP 2 Score: 67.0106 bits (162), Expect = 3.082e-27
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNY 629
            + +L  FF QT HETTGGW  AP G +AWGYC   E+            P    YYGRGPIQL+  Y
Sbjct:   78 RRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEI-----------TPSDPPYYGRGPIQLTHKY 133          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.824e-27
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD------PNYPCRGKYYGRGPIQLSWNYITYG 641
            K ++  F AQ  HETTGGW  AP G YAWG C+  E+   SS YCD      P YP +  Y+GRGPIQ+SWN+  YG
Sbjct:  101 KREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSS-YCDATDKQWPCYPGK-SYHGRGPIQISWNF-NYG 174          

HSP 2 Score: 60.4622 bits (145), Expect = 8.824e-27
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 2
Query:  248 GTAGDGG------ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            G  G GG       +  I+S +++  L  +++D  CPAR FYTY +F+ AA  FP F  +G    RKRE+AAF
Sbjct:   35 GGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAF 107          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.606e-25
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 2
Query:   98 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            +A NCG    C    CCS+FG+CG T +YC +GCQS      C       G+ G G  +  +++   F  + + +    C  + FYT  AF+ A K +P F + G++   KREIAAFF
Sbjct:   19 AAQNCG----CQPNVCCSKFGYCGTTDEYCGDGCQSG----PCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFF 127          

HSP 2 Score: 50.447 bits (119), Expect = 1.606e-25
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYITYG 641
            K ++  FFA   HET               +C+  E+  +++ YCDP    +PC    KYYGRGP+Q+SWNY  YG
Sbjct:  120 KREIAAFFAHATHETGH-------------FCYISEINKSNA-YCDPTKRQWPCAAGQKYYGRGPLQISWNY-NYG 180          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.794e-24
Identity = 45/117 (38.46%), Postives = 58/117 (49.57%), Query Frame = 2
Query:  107 NCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAG--DGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            NCG    C    CCS+FG+CG T  YC  GC+S       G C    GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  F
Sbjct:   26 NCG----CAPNLCCSQFGYCGSTDAYCGTGCRS-------GPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMF 126          

HSP 2 Score: 56.6102 bits (135), Expect = 3.794e-24
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 3
Query:  519 YCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLSWNYITYGA 644
            +C+  E+  AS DYCD N   YPC  GK Y+GRGPIQLSWNY  YGA
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNY-NYGA 181          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.802e-24
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  269 ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            ++G I++  +F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 78          

HSP 2 Score: 50.0618 bits (118), Expect = 3.802e-24
Identity = 29/64 (45.31%), Postives = 35/64 (54.69%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLS 620
            K+++  FF QT HETTGG   A  G +A GYCF RE     S            +YGRGPIQL+
Sbjct:   71 KKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-----------FYGRGPIQLT 122          
The following BLAST results are available for this feature:
BLAST of FC930237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_CARPA3.231e-3764.00Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI8_POPTR2.212e-3540.17Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI2_HORVU1.982e-3361.3326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE2.137e-3260.00Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC3.003e-3156.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ3.082e-2752.94Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI10_ORYSJ8.824e-2751.95Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_MAIZE1.606e-2536.44Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA3.794e-2438.46Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_SOLLC3.802e-2457.38Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionC34005C05EF PostHarvC1 Citrus clementina cDNA clone C34005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930237 ID=FC930237; Name=FC930237; organism=Citrus clementina; type=EST; length=730bp
AGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATTG
GGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCA
GCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTAG
TCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAGGCTGCC
AAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGGG
ACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGATGTT
TGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCT
TCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTT
GGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTT
TTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGT
GGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCTGCGTC
GTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCTCTTGGAACTACATTACTTACGGTGCGGAGAAG
GCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCAGACCTTCTGCTACTGA
TCAGTACTATCATTCAGTCAGCATCTGGTT
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