FC930237

Overview
NameFC930237
Unique NameFC930237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.937e-24
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   98 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            +A +CG    C   +CCS++G+CG  +DYC  GCQ+           P D  A +   +  I++ + F  L+   +D  C A+ FYT DAF+ AA  +P+FG +G+    KREIAAFF
Sbjct:   24 AAQSCG----CASDQCCSKWGFCGTGSDYCGTGCQAG----------PCDVPATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFF 126          

HSP 2 Score: 50.447 bits (119), Expect = 4.937e-24
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR-GK-YYGRGPIQLSWNYITYG 641
            K ++  FFA   HET               +C+  E+   S +YCD     +PC  GK YYGRGP+Q+SWN+  YG
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNF-NYG 180          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.374e-24
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 2
Query:  275 GKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            G I++R++FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 86          

HSP 2 Score: 48.1358 bits (113), Expect = 8.374e-24
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLS 620
            K+++  FF QT HET GG      G +  GYCF R++  +             +YYGRGPIQL+
Sbjct:   79 KKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD------------RYYGRGPIQLT 126          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 57/105 (54.29%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   95 GSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 391
            GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.845e-23
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 2
Query:  275 GKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            G I++R++FE +L +RN+  CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFF 86          

HSP 2 Score: 46.9802 bits (110), Expect = 1.845e-23
Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLS 620
            K+++  FF QT HET GG      G +  GYCF +++  +             +YYGRGPIQL+
Sbjct:   79 KKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD------------RYYGRGPIQLT 126          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.395e-23
Identity = 46/119 (38.66%), Postives = 59/119 (49.58%), Query Frame = 2
Query:   98 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            +A NCG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFF
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          

HSP 2 Score: 47.7506 bits (112), Expect = 2.395e-23
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYITYG 641
            K ++  FFA   HET               +C+  E+  +++ YCD +   +PC    KYYGRGP+Q+SWNY  YG
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNA-YCDASNRQWPCAAGQKYYGRGPLQISWNY-NYG 191          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.401e-23
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  272 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            +G I++  +F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 85          

HSP 2 Score: 53.9138 bits (128), Expect = 2.401e-23
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLS 620
            K+++  FF QT HETTGG   +P G YA GYCF RE     +            YYGRGPIQL+
Sbjct:   78 KKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-----------YYGRGPIQLT 129          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.958e-23
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  272 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG SG++T R++EIAAFF
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFF 86          

HSP 2 Score: 46.2098 bits (108), Expect = 8.958e-23
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLS 620
            ++++  FF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLT 128          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.165e-22
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  248 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFF 451
            G A  G  +G +I++ +F  +L  R++ +CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF
Sbjct:   26 GAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFF 92          

HSP 2 Score: 56.9954 bits (136), Expect = 1.165e-22
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 3
Query:  426 VKEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLS 620
            ++ +L  FF QT HETTGG       ++ WGYCF  E+  A+S            YYGRGPIQL+
Sbjct:   84 IRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP----------PYYGRGPIQLT 137          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.967e-22
Identity = 42/122 (34.43%), Postives = 59/122 (48.36%), Query Frame = 2
Query:   98 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            SA NCG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFF
Sbjct:   28 SAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFF 145          

HSP 2 Score: 57.3806 bits (137), Expect = 1.967e-22
Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYITYG 641
            K ++  FFA   HET                C+  E+  AS DYCD N   +PC+   KYYGRGP+Q+SWNY  YG
Sbjct:  138 KREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNY-NYG 199          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.967e-22
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 2
Query:   98 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQS-----NCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            +A NCG    C  G CCS++G+CG T  YC +GCQS     +  +   G      G AG G  +  +++   F   ++ +    C  + FYT  +F+ AA+++  F N       KREIAAFF
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNG-IKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          

HSP 2 Score: 52.7582 bits (125), Expect = 1.967e-22
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYITYG 641
            K ++  FFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q+SWN+  YG
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNF-NYG 196          
The following BLAST results are available for this feature:
BLAST of FC930237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_ORYSJ4.937e-2438.14Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLCI8.374e-2459.32Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIC_POPTR1.589e-2354.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIA_SOLLC1.845e-2359.32Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_MAIZE2.395e-2338.66Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIT_PETHY2.401e-2356.67Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC8.958e-2358.33Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ1.165e-2250.72Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ1.967e-2234.43Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.967e-2234.15Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005C05EF PostHarvC1 Citrus clementina cDNA clone C34005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930237 ID=FC930237; Name=FC930237; organism=Citrus clementina; type=EST; length=730bp
AGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATTG
GGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCA
GCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTAG
TCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAGGCTGCC
AAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGGG
ACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGATGTT
TGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCT
TCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTT
GGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTT
TTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGT
GGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCTGCGTC
GTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCTCTTGGAACTACATTACTTACGGTGCGGAGAAG
GCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCAGACCTTCTGCTACTGA
TCAGTACTATCATTCAGTCAGCATCTGGTT
back to top