FC930237

Overview
NameFC930237
Unique NameFC930237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.567e-22
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  272 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            +G I++  +F ++L+ RND RCPA  FYTYDAFI AA +FP FG +G++T R++EIAAFF
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFF 86          

HSP 2 Score: 46.2098 bits (108), Expect = 2.567e-22
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLS 620
            ++++  FF QT HETTGG   A    +  GYCF R+     +D  D       +YYGRGPIQL+
Sbjct:   79 RKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-----NDQSD-------RYYGRGPIQLT 128          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.290e-22
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  110 CGSGV---VCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            CG+ V    C    CCS  GWCG   DYC    CQ  C+  V G      G +        +++  +F+ +  +R D  CP++ FY+Y +F+ AA++FPAFG  G+   RKRE+AAF
Sbjct:   72 CGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAF 186          

HSP 2 Score: 40.817 bits (94), Expect = 7.290e-22
Identity = 25/74 (33.78%), Postives = 35/74 (47.30%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC-DPNYPCRG--KYYGRGPIQLSWNYITYG 641
            K ++  F A     T+G   D     +AWG C         +D+C   ++PC    KY  RGPIQL+ N+  YG
Sbjct:  180 KREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNF-NYG 251          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.100e-21
Identity = 48/127 (37.80%), Postives = 59/127 (46.46%), Query Frame = 2
Query:  101 AGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDP----------DDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            A NCG    C    CCS FG+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFF
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFF 143          

HSP 2 Score: 48.521 bits (114), Expect = 2.100e-21
Identity = 30/74 (40.54%), Postives = 34/74 (45.95%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLSWNY 629
            K ++  FFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QLSWNY
Sbjct:  136 KREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNY 196          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.632e-21
Identity = 43/118 (36.44%), Postives = 58/118 (49.15%), Query Frame = 2
Query:   98 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            SA NCG    C  G CCS++G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          

HSP 2 Score: 50.447 bits (119), Expect = 4.632e-21
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  519 YCFNREVGAASSDYCDPN----YPCRGK--YYGRGPIQLSWNYITYG 641
            +C+  E+  AS DYCD      YPC     Y+GRGPIQLSWN+  YG
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNF-NYG 181          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.430e-20
Identity = 33/72 (45.83%), Postives = 40/72 (55.56%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRGKYYGRGPIQLSWNYITYGA 644
            K ++  F AQT HETTGGWP AP G Y        E+G+ S             Y+GRGPIQ+S+NY  YGA
Sbjct:   45 KREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSD------------YFGRGPIQISYNY-NYGA 95          

HSP 2 Score: 58.151 bits (139), Expect = 8.430e-20
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 2
Query:  272 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAF 448
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAF 51          
BLAST of FC930237 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.842e-19
Identity = 42/104 (40.38%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  143 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 451
            CCS+ G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+F
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYF 104          

HSP 2 Score: 43.5134 bits (101), Expect = 1.842e-19
Identity = 24/71 (33.80%), Postives = 35/71 (49.30%), Query Frame = 3
Query:  429 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNY 629
            K ++  +FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QLSWNY
Sbjct:   97 KREIAAYFAHVTHETGH-------------LCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNY 154          
The following BLAST results are available for this feature:
BLAST of FC930237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIQ_TOBAC2.567e-2256.67Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
AGI_URTDI7.290e-2237.61Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU2.100e-2137.80Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_PHAVU4.632e-2136.44Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_AVESA8.430e-2045.83Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIT_DIOJA1.842e-1940.38Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34005C05EF PostHarvC1 Citrus clementina cDNA clone C34005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930237 ID=FC930237; Name=FC930237; organism=Citrus clementina; type=EST; length=730bp
AGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGCTTATTG
GGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCA
GCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTAG
TCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGTGAAGGCTGCC
AAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGGG
ACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGAAGATGTT
TGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCT
TCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTT
GGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTT
TTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGT
GGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGGCGCTGCGTC
GTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCTCTTGGAACTACATTACTTACGGTGCGGAGAAG
GCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCAGACCTTCTGCTACTGA
TCAGTACTATCATTCAGTCAGCATCTGGTT
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