FC930240

Overview
NameFC930240
Unique NameFC930240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR2_BOVIN (Pyrroline-5-carboxylate reductase 2 OS=Bos taurus GN=PYCR2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 80/211 (37.91%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ +G   +G+L   +I  ++   +L    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DA+TGLSGSGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKETVRHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVLVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR2_RAT (Pyrroline-5-carboxylate reductase 2 OS=Rattus norvegicus GN=Pycr2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 81/211 (38.39%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ +G   +GVL   +I  ++   +L    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DAITGLSGSGPAY F+A++ALADGGV  G+PR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLACALARGFTAAGVLSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLIDAITGLSGSGPAYAFMALDALADGGVKMGVPRRLAVRLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR1_MOUSE (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Mus musculus GN=Pycr1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 82/211 (38.86%), Postives = 111/211 (52.61%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ KG   +GVL   +I  ++   +     A   IGV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E  TV + G  A  EDG L+ +L GSVG     +E L DA+TGLSGSGPAY F A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDQATVSALRKIGVNLTPHNKETVRHSDVLFLAVKPHIIPFILDEIGANIEDRHIVVSCAAGVTINSIEKKLTAFQPAPKVIRCMTNTPVVVREGVTVYATGTHAQVEDGRLVEQLMGSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR1_BOVIN (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Bos taurus GN=PYCR1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 81/211 (38.39%), Postives = 112/211 (53.08%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ KG   +GV+   +I  ++   +L    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPAY F A++ALADGGV  GLPR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLAFALAKGFTAAGVVAAHKIMASSPDMDLATVSALRKMGVNLTHHNKETVQHSDVLFLAVKPHIIPFILDEIAANIEARHIVVSCAAGVTISSIEKKLTAFQPAPKVIRCMTNTPVVVREGATVYATGTHAQVEDGRLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR2_MOUSE (Pyrroline-5-carboxylate reductase 2 OS=Mus musculus GN=Pycr2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 81/211 (38.39%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG++A ++ +G   +GVL   +I  ++   +L    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DAITGLSGSGPAY F+A++ALADGGV  G+PR LA+ L +Q +LGA
Sbjct:    3 VGFIGAGQLACALARGFTAAGVLSAHKIIASSPDMDLPTVSALRRMGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLIDAITGLSGSGPAYAFMALDALADGGVKMGVPRRLAVRLGAQALLGA 213          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR3_DANRE (Pyrroline-5-carboxylate reductase 3 OS=Danio rerio GN=pycrl PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 74/209 (35.41%), Postives = 110/209 (52.63%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT-GHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +GFIGAG MA  + +G+  SG +PP  I  +  S  NL R   F+  GV V   N+                       +I   ++++ ++VS+AAG+ +  L+E     +  IR+MPN P  + E A ++S G  A E++  L+  L G  G +    E   DA  GLSGSG A++++  EALADG V  G+P  LA  +A+QT+LGA
Sbjct:   21 IGFIGAGNMAFGVAQGIIASGKVPPSNIIISAPSMNNLPR---FKEKGVSVTHSNHEVVGGSRLIFLAVKPHIIPQVLKEISQEVTKEHIIVSMAAGITIATLEELLPAGTHVIRIMPNLPCMLLEGALLLSCGSHAGEQEETLLKTLLGPCGLVEFGPESWIDAHVGLSGSGVAFVYVFAEALADGAVKMGMPSTLARRIAAQTILGA 226          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_SYNY3 (Pyrroline-5-carboxylate reductase OS=Synechocystis sp. (strain PCC 6803) GN=proC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 74/208 (35.58%), Postives = 101/208 (48.56%), Query Frame = 2
Query:   86 SFILGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 709
            S  LG IG G MAE+I+  +       P+ I        +R    ++  V+V  DN                         +    +R  L++S+ AGV L+ +Q+       IR MPNTP+ VG   T ++       +       +F +VG +    E L DA+TG+SGSGPAY+ L IEALADGGV AGLPR +A  LA QTVLG
Sbjct:    2 SIQLGIIGGGVMAEAILARLIAEKTYAPEEIIVGEPHGARRDYLQKTYQVRVSPDNQEAANVSEVLLLAVKPQVLDRVLASLAGGANRP-LVISILAGVSLQRIQKGFPDHAIIRAMPNTPATVGAGMTAIAANKMVEPDQLAKAKAIFSAVGNVVEVPENLMDAVTGVSGSGPAYVALMIEALADGGVLAGLPRAIAQKLALQTVLG 208          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR3_RAT (Pyrroline-5-carboxylate reductase 3 OS=Rattus norvegicus GN=Pycrl PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 66/206 (32.04%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLG 709
            +GF+GAG+MAE+I +G+ ++G +   ++  +  ++ K    F ++G +    N+                       ++ P+++ + ++VSVAAG+ L  ++E     +R +RV PN P  V E A VM+ G  A  ED +L+  L  + G+     E   D  TGLSGSG A++    EALA+G +  G+P +LA  +A+QT+LG
Sbjct:   11 VGFVGAGRMAEAIAQGLIRAGKVEAKQVLASAPTD-KNLCHFRALGCQTTHSNHEVLQNCPLVIFATKPQVLPAVLAEVAPVVTTEHIIVSVAAGISLSSMEELLPPKTRVLRVSPNLPCVVQEGAMVMTRGHHAGNEDAKLLQNLLEACGQCIEVPESYVDIHTGLSGSGVAFVCTFSEALAEGAIKMGMPSDLAHRIAAQTLLG 215          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_PSEAE (Pyrroline-5-carboxylate reductase OS=Pseudomonas aeruginosa GN=proC PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 69/208 (33.17%), Postives = 100/208 (48.08%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVG-KIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            + FIGAG MA S++ G+   GV P  +I  +     +R        + V+  N                         + P L  ++L+VS+AAG+    L+ W G  R  +R MPNTP+ + + A+ +      +    E  G+L  +VG  +W  DE   DA+T +SGSGPAY FL ++A+ D G   GL RE A  L  QT LGA
Sbjct:    6 IAFIGAGNMAASLIGGLRAQGV-PAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLLMQAMTDAGEKLGLSRETASRLTLQTALGA 212          
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR1_BACSU (Pyrroline-5-carboxylate reductase 1 OS=Bacillus subtilis GN=proH PE=3 SV=5)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 63/208 (30.29%), Postives = 103/208 (49.52%), Query Frame = 2
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFE-SIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            + FIGAG MAE ++ G+ ++  +P   IC    SN +R    E   G+K    N                         ++  +   +L++SV AG+    + Q        +RVMPNT S +G +AT ++LG   +E+  +L   L G +G+++   E   D  TG++GSGPAY +  +E +   G  AGL ++L+  + +QT+LGA
Sbjct:   19 VAFIGAGSMAEGMISGIVRANKIPKQNICVTNRSNTERLTELELQYGIKGALPNQLCIEDMDVLILAMKPKDAENALSSLKSRIQPHQLILSVLAGITTSFIEQSLLNEQPVVRVMPNTSSMIGASATAIALGKYVSEDLKKLAEALLGCMGEVYTIQENQMDIFTGIAGSGPAYFYYLMEFIEKTGEEAGLDKQLSRSIGAQTLLGA 226          
The following BLAST results are available for this feature:
BLAST of FC930240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
P5CR2_BOVIN2.413e-2937.91Pyrroline-5-carboxylate reductase 2 OS=Bos taurus ... [more]
P5CR2_RAT3.151e-2938.39Pyrroline-5-carboxylate reductase 2 OS=Rattus norv... [more]
P5CR1_MOUSE3.151e-2938.86Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR1_BOVIN4.116e-2938.39Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR2_MOUSE5.375e-2938.39Pyrroline-5-carboxylate reductase 2 OS=Mus musculu... [more]
P5CR3_DANRE7.265e-2635.41Pyrroline-5-carboxylate reductase 3 OS=Danio rerio... [more]
P5CR_SYNY34.709e-2535.58Pyrroline-5-carboxylate reductase OS=Synechocystis... [more]
P5CR3_RAT1.370e-2432.04Pyrroline-5-carboxylate reductase 3 OS=Rattus norv... [more]
P5CR_PSEAE1.160e-2333.17Pyrroline-5-carboxylate reductase OS=Pseudomonas a... [more]
P5CR1_BACSU1.160e-2330.29Pyrroline-5-carboxylate reductase 1 OS=Bacillus su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005C08EF PostHarvC1 Citrus clementina cDNA clone C34005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930240 ID=FC930240; Name=FC930240; organism=Citrus clementina; type=EST; length=714bp
GGTAAGTGGAGATATTAGGGGAAAAAAATTTGTTCAGAACAGCGACGACG
AGGCGATTATGGACGCATTTCCTATTCCTGCCGAAAGCTTCATTCTAGGC
TTCATTGGAGCGGGCAAAATGGCGGAGAGCATTGTCAAAGGAGTGGCGAA
ATCGGGCGTGTTGCCGCCCGATCGTATCTGCACCGCCGTCCACTCTAATC
TCAAACGCCGTGATGCTTTTGAGTCCATCGGCGTCAAAGTATTATCCGAC
AATAACGCCGTTGTTGAATACAGCGATGTGGTTGTTTTCTCTGTGAAACC
GCAAGTAGTTAAAGATGTGGCCATGCAGATAAGGCCGCTGTTATCACGGA
AGAAGCTTTTGGTTTCTGTTGCTGCAGGAGTGAAATTGAAAGACCTTCAG
GAATGGACTGGTCACAGCCGGTTTATTAGAGTTATGCCTAATACACCTTC
TGCTGTAGGTGAGGCTGCAACAGTTATGAGCTTGGGAGGAACTGCAACAG
AAGAGGATGGGGAACTAATCGGTAAATTATTCGGATCAGTTGGCAAGATA
TGGCGAGCGGATGAGAAATTGTTTGATGCAATCACGGGCCTGAGTGGCAG
CGGTCCAGCATATATATTTTTAGCAATTGAAGCTTTGGCTGATGGAGGTG
TGGCTGCAGGGCTACCGCGAGAACTTGCACTTGGTCTAGCTTCTCAGACA
GTATTAGGAGCAGC
back to top