FC930240

Overview
NameFC930240
Unique NameFC930240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15123 contig Ccv1_Contig15123:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_NEUCR (Pyrroline-5-carboxylate reductase OS=Neurospora crassa GN=pro-1 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 2 
Query:  350 KKLLVSVAAGVKLKDLQ----EWTGHSR-----FIRVMPNTPSAVGEAATVMS-----LGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            +K+++S+ AGV + DL+    E  G S       +R MPNT S + E+ TV++     L  T TE    L+  +F  +G++      L DA T L  SG A+  L +EA ADGGVA GLPR  A  +A+QT+ GA
Sbjct:  135 QKIIISICAGVTVPDLERVLREDVGLSADNLPIVVRAMPNTASKIRESMTVINTVDPPLPDTVTE----LLTWIFERIGEVVYLPPHLMDACTSLCASGTAFFALMMEAAADGGVAMGLPRAEANRMAAQTMRGA 265
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_ZALAR (Pyrroline-5-carboxylate reductase OS=Zalerion arboricola GN=P5CR PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 2 
Query:  353 KLLVSVAAGVKLKDLQ-----------EWTGHSRFIRVMPNTPSAVGEAATVMSLGGTA-TEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            KLL+S+ AGV  + +            E  G  + +R MPNT S + E+ TV++      +     LI  +F  +G + +      DA T L GSGPA+  L +EA  DG VA GLPR  A  +A+QT+ GA
Sbjct:  123 KLLISILAGVPAEQIYGYMYGKTPVNPEKEGLCQVVRAMPNTASGIRESMTVIATSSPPLSATTSSLITWIFKRIGDVVQLPAATMDASTALCGSGPAFFALILEAAIDGAVAMGLPRAEAQRMAAQTMKGA 254
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_PASMU (Pyrroline-5-carboxylate reductase OS=Pasteurella multocida GN=proC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 61/210 (29.05%), Postives = 88/210 (41.90%), Query Frame = 2 
Query:  101 FIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSR----KKLLVSVAAGVKLKDLQEWTGHSR-FIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKI-WRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGA 712
            FIG G MA++I+ G+ K G   P    T    N  +R      GV  +  +                         +   LS     +KL++S+AAGV +  LQ     ++  +RVMPNTP+ V E  + +    +   E  +    L  +VGK  W   E     IT  SGS PAY FL +EA+        +  + A  L  Q+ LGA
Sbjct:    8 FIGGGNMAQAIIFGLLKQGY--PANQITVSDPNAAKRQCLAEKGVNTVEASQTDTQDAVETSEVLLLAVKPQMIAAVCQGLSAVDFSQKLVISIAAGVSVTKLQSRLPTAKQIVRVMPNTPALVAEGMSGLFAQNSLKPEYKQFTQDLLNAVGKTCWVTQEADMHTITAGSGSSPAYFFLFMEAMQQALCQMNMDEDTARLLVQQSALGA 215
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_STAAW (Pyrroline-5-carboxylate reductase OS=Staphylococcus aureus (strain MW2) GN=proC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 51/195 (26.15%), Postives = 85/195 (43.59%), Query Frame = 2 
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRE 673
            L F GAG MA++I  G+  S  L  + I     SN +   AF E +GV    D+                      A +I+P +++    +S+ AG+ +  + Q+    +   R+MPNT + VG + T +S       +  + I  L  + G +    E     +T ++GSGPA+++   E     G   GL +E
Sbjct:    3 LVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAFAEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVSEDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKE 197
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_STAAS (Pyrroline-5-carboxylate reductase OS=Staphylococcus aureus (strain MSSA476) GN=proC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 51/195 (26.15%), Postives = 85/195 (43.59%), Query Frame = 2 
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRE 673
            L F GAG MA++I  G+  S  L  + I     SN +   AF E +GV    D+                      A +I+P +++    +S+ AG+ +  + Q+    +   R+MPNT + VG + T +S       +  + I  L  + G +    E     +T ++GSGPA+++   E     G   GL +E
Sbjct:    3 LVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAFAEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVSEDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKE 197
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_STAAR (Pyrroline-5-carboxylate reductase OS=Staphylococcus aureus (strain MRSA252) GN=proC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 51/195 (26.15%), Postives = 85/195 (43.59%), Query Frame = 2 
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRE 673
            L F GAG MA++I  G+  S  L  + I     SN +   AF E +GV    D+                      A +I+P +++    +S+ AG+ +  + Q+    +   R+MPNT + VG + T +S       +  + I  L  + G +    E     +T ++GSGPA+++   E     G   GL +E
Sbjct:    3 LVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAFAEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVSEDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKE 197
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_STAAN (Pyrroline-5-carboxylate reductase OS=Staphylococcus aureus (strain N315) GN=proC PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 51/195 (26.15%), Postives = 85/195 (43.59%), Query Frame = 2 
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRE 673
            L F GAG MA++I  G+  S  L  + I     SN +   AF E +GV    D+                      A +I+P +++    +S+ AG+ +  + Q+    +   R+MPNT + VG + T +S       +  + I  L  + G +    E     +T ++GSGPA+++   E     G   GL +E
Sbjct:    3 LVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAFAEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVSEDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKE 197
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_STAAM (Pyrroline-5-carboxylate reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=proC PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 51/195 (26.15%), Postives = 85/195 (43.59%), Query Frame = 2 
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRE 673
            L F GAG MA++I  G+  S  L  + I     SN +   AF E +GV    D+                      A +I+P +++    +S+ AG+ +  + Q+    +   R+MPNT + VG + T +S       +  + I  L  + G +    E     +T ++GSGPA+++   E     G   GL +E
Sbjct:    3 LVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAFAEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVSEDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKE 197
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_STAAC (Pyrroline-5-carboxylate reductase OS=Staphylococcus aureus (strain COL) GN=proC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 51/195 (26.15%), Postives = 85/195 (43.59%), Query Frame = 2 
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSNLKRRDAF-ESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDL-QEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRE 673
            L F GAG MA++I  G+  S  L  + I     SN +   AF E +GV    D+                      A +I+P +++    +S+ AG+ +  + Q+    +   R+MPNT + VG + T +S       +  + I  L  + G +    E     +T ++GSGPA+++   E     G   GL +E
Sbjct:    3 LVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAFAEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVSEDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKE 197
[Close]
BLAST of FC930240 vs. ExPASy Swiss-Prot
Match: P5CR_STAS1 (Pyrroline-5-carboxylate reductase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=proC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 49/194 (25.26%), Postives = 84/194 (43.30%), Query Frame = 2 
Query:   95 LGFIGAGKMAESIVKGVAKSGVLPPDRICTAVHSN-LKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPR 670
            L F GAG MA +I  G+  S V+  + I     SN +  ++  E +GV    D+ A                    A +I+P ++ K   +S+ AG+ +  ++E     +   R+MPNT + VG + T +S          + + +L  + G      E     +T ++GSGPA+++   E     G   GL +
Sbjct:    3 LVFYGAGNMAHAIFTGIVNSKVIDSNDIYLTNRSNEVALKEYAEKLGVNYSYDDEALLKAADYVFLGTKPYDFESLAERIKPFITDKNKFISIMAGLPISYIREKLEADNPIARIMPNTNAHVGHSVTGISFSSNFGPNSKDEVDELINAFGSAIEVPEDNLHQVTAITGSGPAFLYHVFEQYVTAGTRLGLEK 196
The following BLAST results are available for this feature:
BLAST of FC930240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
P5CR_NEUCR3.166e-1339.26Pyrroline-5-carboxylate reductase OS=Neurospora cr... [more]
P5CR_ZALAR5.400e-1336.36Pyrroline-5-carboxylate reductase OS=Zalerion arbo... [more]
P5CR_PASMU5.400e-1329.05Pyrroline-5-carboxylate reductase OS=Pasteurella m... [more]
P5CR_STAAW7.053e-1326.15Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAAS7.053e-1326.15Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAAR7.053e-1326.15Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAAN7.053e-1326.15Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAAM7.053e-1326.15Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAAC7.053e-1326.15Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]
P5CR_STAS11.571e-1225.26Pyrroline-5-carboxylate reductase OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionC34005C08EF PostHarvC1 Citrus clementina cDNA clone C34005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930240 ID=FC930240; Name=FC930240; organism=Citrus clementina; type=EST; length=714bp
GGTAAGTGGAGATATTAGGGGAAAAAAATTTGTTCAGAACAGCGACGACG
AGGCGATTATGGACGCATTTCCTATTCCTGCCGAAAGCTTCATTCTAGGC
TTCATTGGAGCGGGCAAAATGGCGGAGAGCATTGTCAAAGGAGTGGCGAA
ATCGGGCGTGTTGCCGCCCGATCGTATCTGCACCGCCGTCCACTCTAATC
TCAAACGCCGTGATGCTTTTGAGTCCATCGGCGTCAAAGTATTATCCGAC
AATAACGCCGTTGTTGAATACAGCGATGTGGTTGTTTTCTCTGTGAAACC
GCAAGTAGTTAAAGATGTGGCCATGCAGATAAGGCCGCTGTTATCACGGA
AGAAGCTTTTGGTTTCTGTTGCTGCAGGAGTGAAATTGAAAGACCTTCAG
GAATGGACTGGTCACAGCCGGTTTATTAGAGTTATGCCTAATACACCTTC
TGCTGTAGGTGAGGCTGCAACAGTTATGAGCTTGGGAGGAACTGCAACAG
AAGAGGATGGGGAACTAATCGGTAAATTATTCGGATCAGTTGGCAAGATA
TGGCGAGCGGATGAGAAATTGTTTGATGCAATCACGGGCCTGAGTGGCAG
CGGTCCAGCATATATATTTTTAGCAATTGAAGCTTTGGCTGATGGAGGTG
TGGCTGCAGGGCTACCGCGAGAACTTGCACTTGGTCTAGCTTCTCAGACA
GTATTAGGAGCAGC
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