FC930244

Overview
NameFC930244
Unique NameFC930244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15124 contig Ccv1_Contig15124:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  163 VVTLELEMADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            V+++ L +   ++  +H  +  ++I I +         +   + L  D   G+ ++S   +LYG     I+   GN++G     YL S     + DEIDFEFLG    D  IV TN YT G G+RE+   L FD +  FH Y I W P  I + IDG
Sbjct:    8 VMSISLFLGLSILLVVHGKDFNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQ--GLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDG 162          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.254e-14
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = 1
Query:  229 KEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            K+  + ++P       D  S TL  D   GA + S   FL+G     I+  +G++ G     Y+SS     ++DEIDFEFLG       I+QTN Y  G  NREE   L FD ++ FH Y I W    I +++D
Sbjct:   39 KDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSS--DQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVD 170          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  259 ACTHCADSNSIT-LTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            A  HC +   +T L  D+  GA + S +++L+G  S  I+  +G+++G     Y+SS     + +E DFEFLG    +  IVQTN Y  G GNRE+  +L FD +  FH Y I W    + +++D
Sbjct:   38 AMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSS--DGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVD 160          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 45/122 (36.89%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  268 HCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            H  D   ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  I + +DG
Sbjct:   45 HDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDG 164          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  298 TFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            ++ ++ G  +R+ + F YG +   ++  K      +F  Y    + +   DEID EFLGKD T VQ N+Y  G G  E +H+LGFD S+ FH Y  +W PD I + +DG
Sbjct:   87 SYPYKSG-EYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNP-WDEIDIEFLGKDTTKVQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDG 193          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  283 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + + L  D   G  ++S   +L+G FS  I+ P G+T+G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD S+ +H Y I W    I + +D
Sbjct:   55 SELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVD 168          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_BREBE (Beta-glucanase OS=Brevibacillus brevis GN=bglBB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:  328 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQ-DEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            R+   + YG F   ++  K   +  +F  Y    + D    DEID EFLGKD T +Q NY+T G G  E  +DLGFD SE F+ Y  +W  D I W ++G
Sbjct:  100 RTNDFYHYGLFEVSMKPAKVEGTVSSFFTYTGEWDWDGDPWDEIDIEFLGKDTTRIQFNYFTNGVGGNEFYYDLGFDASESFNTYAFEWREDSITWYVNG 199          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE-GDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGN--REEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            D  S+ LT D R G+ + S   +L+G FSS I+ P   ++G+    YLS+ +  +K+ DEIDFEFLG     +  +QTN Y  G+ +  REE ++L FD +E FH+Y I W    I + +D
Sbjct:   49 DGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVD 169          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  283 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            + + L  D   G  ++S   +L+G FS  I+ P G+T+G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD S+ +H Y + W    I + +D
Sbjct:   54 SELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVD 167          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            +TL+ D   G+ ++S T +L+G     I+   GN++G     YL S EG  + DEIDFEFLG    D   + TN YT G G++E+   L FD +  FH Y I W P  I   +D
Sbjct:   46 LTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKS-EGS-TWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVD 157          
The following BLAST results are available for this feature:
BLAST of FC930244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH21_ARATH1.726e-1433.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH2.254e-1435.82Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH9_ARATH2.943e-1436.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH17_ARATH2.943e-1436.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTH2.943e-1437.61Beta-glucanase OS=Clostridium thermocellum (strain... [more]
XTH4_ARATH5.020e-1439.66Xyloglucan endotransglucosylase/hydrolase protein ... [more]
GUB_BREBE5.020e-1440.00Beta-glucanase OS=Brevibacillus brevis GN=bglBB PE... [more]
XTH28_ARATH6.557e-1439.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB8.564e-1438.79Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH24_ARATH1.118e-1339.47Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionC34005C12EF PostHarvC1 Citrus clementina cDNA clone C34005C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930244 ID=FC930244; Name=FC930244; organism=Citrus clementina; type=EST; length=624bp
AGAAAAGGTTGTTCGTTATGATCAGATGGTGGATAGGCAAGGCCCGTGAA
TCGTTTTTAGAAATGCTTAGGAGCAGTGGGCTCACTGTAAAAAGTCTGGT
TTCTCCTTCAGTTGACTTCACTTTCTTTCTTCCGTAAATTGAAATCGGTA
AGCAGCAATTCTGTCGTGACCCTTGAACTTGAAATGGCGGATCCAGTTGT
CCAGAGTCTCCATCAAACTGAACCCATAAAAGAAATCGCCATAGATTACA
CCCCGGAAGCATGCACTCACTGCGCAGACTCCAATTCGATCACACTCACC
TTCGATCACCGCGGCGGAGCCAGGTGGCGCTCCACCACTCGCTTCCTCTA
CGGCACCTTCAGCTCCCTGATCCAGTGCCCCAAAGGCAACACTAGTGGCC
TCAACTTCAACATCTACCTTTCTTCTCTAGAAGGCGACAAATCCCAAGAC
GAAATCGACTTTGAATTCCTTGGCAAGGACAAGACTATCGTTCAAACCAA
TTATTACACTACAGGAACCGGGAATAGAGAGGAGATTCATGATCTGGGGT
TCGATTGTTCTGAAGGATTTCATGAGTACGTGATCAAGTGGGGTCCAGAT
TTGATCCAGTGGTTGATTGATGGG
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