FC930244

Overview
NameFC930244
Unique NameFC930244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15124 contig Ccv1_Contig15124:1..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            +TL+ D   G+ ++S   +L+G  S  ++   GN++G    +YL S     + DEIDFEFLG    +   + TN YT G G++E+   L FD +  FH Y I W P  I + +DG
Sbjct:   45 LTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKS--PGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDG 157          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            +T T D   G+ ++S   +L+G     I+   GN++G     YLSS    ++ DEIDFEFLG       ++ TN +T G GNRE    L FD +  FH Y + W P  I +L+DG
Sbjct:   49 LTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSK--GETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDG 161          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            ++L+ D   G+ ++S   +L+G     ++   GN++G     YLSS     + DEIDFEFLG    D  I+ TN +T G GNRE+   L FD +  FH Y I W P  I +L+D
Sbjct:   54 LSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQ--GPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVD 165          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  295 LTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            L  D   GA ++S   +L+G FS  ++   G+++G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD ++G+H Y + W   LI   +D
Sbjct:   57 LILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSS--NNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVD 166          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  277 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            D   ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT G+G++E+   L FD +  FH Y I W P  I + +DG
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDG 164          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  244 DYTPEACTH----CADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            +Y P   +H     +  +++ L  D   GA ++S   +L+G FS  ++   G+++G+    YLSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD ++G+H Y + W    I   +D
Sbjct:   35 NYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSS--NNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVD 165          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            +TL+ D   G+ ++S   +L+G     I+   GN++G     YL S     + DEIDFEFLG    D   + TN +T G G+RE+   L FD +  FH Y I W P  I + +DG
Sbjct:   48 LTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKS--PGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDG 160          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: GUB_CLOTM (Beta-glucanase OS=Clostridium thermocellum GN=licB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  298 TFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            ++ ++ G  +RS + F YG +   ++  K      +F  Y    + +   DEID EFLGKD T  Q N+Y    G  E +H+LGFD S+ FH Y  +W PD I + +DG
Sbjct:   87 SYPYKSG-EYRSKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNP-WDEIDIEFLGKDTTKAQFNWYKNEVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDG 193          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  289 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLID 621
            +TL+ D   G+ +++   +L+G     ++   GN++G     YL S +GD + DEIDFEFLG    D   + TN YT G G+RE+   L FD +  FH Y + W P  I +++D
Sbjct:   52 LTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKS-KGD-TWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVD 163          
BLAST of FC930244 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  283 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDG 624
            N ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  + + IDG
Sbjct:   50 NLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDG 164          
The following BLAST results are available for this feature:
BLAST of FC930244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH22_ARATH1.118e-1336.52Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH12_ARATH1.908e-1338.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN1.908e-1338.60Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH1_SOLLC2.492e-1339.29Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH2.492e-1336.13Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC3.254e-1333.83Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH3.254e-1337.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTM3.254e-1336.70Beta-glucanase OS=Clostridium thermocellum GN=licB... [more]
XTH25_ARATH4.250e-1336.84Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH4.250e-1337.61Xyloglucan endotransglucosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005C12EF PostHarvC1 Citrus clementina cDNA clone C34005C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930244 ID=FC930244; Name=FC930244; organism=Citrus clementina; type=EST; length=624bp
AGAAAAGGTTGTTCGTTATGATCAGATGGTGGATAGGCAAGGCCCGTGAA
TCGTTTTTAGAAATGCTTAGGAGCAGTGGGCTCACTGTAAAAAGTCTGGT
TTCTCCTTCAGTTGACTTCACTTTCTTTCTTCCGTAAATTGAAATCGGTA
AGCAGCAATTCTGTCGTGACCCTTGAACTTGAAATGGCGGATCCAGTTGT
CCAGAGTCTCCATCAAACTGAACCCATAAAAGAAATCGCCATAGATTACA
CCCCGGAAGCATGCACTCACTGCGCAGACTCCAATTCGATCACACTCACC
TTCGATCACCGCGGCGGAGCCAGGTGGCGCTCCACCACTCGCTTCCTCTA
CGGCACCTTCAGCTCCCTGATCCAGTGCCCCAAAGGCAACACTAGTGGCC
TCAACTTCAACATCTACCTTTCTTCTCTAGAAGGCGACAAATCCCAAGAC
GAAATCGACTTTGAATTCCTTGGCAAGGACAAGACTATCGTTCAAACCAA
TTATTACACTACAGGAACCGGGAATAGAGAGGAGATTCATGATCTGGGGT
TCGATTGTTCTGAAGGATTTCATGAGTACGTGATCAAGTGGGGTCCAGAT
TTGATCCAGTGGTTGATTGATGGG
back to top