FC930245

Overview
NameFC930245
Unique NameFC930245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 58/134 (43.28%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            F+L P PY  +AL+PH+SK+TLE+H  KHH  YV NLN  + GTE  +GK+LE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV KA
Sbjct:    3 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKA 130          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 55/134 (41.04%), Postives = 70/134 (52.24%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            F+L   P+ +NALEPH+S++TLE+H+GKHH  YV  LN  + GTEL + KSLE+++  S         FNNAAQ WNH F+W                  IE+ FGS               FGS W WLV  A
Sbjct:    2 FELPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEGTELAE-KSLEEIIKTSTG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLVKNA 129          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 54/131 (41.22%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            ++L   P+   AL P+++K+TLEFH  KHH AYV+N N  +  T+L DG+ +E V+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV
Sbjct:    3 YELPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDL-DGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLV 132          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 57/134 (42.54%), Postives = 70/134 (52.24%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            F+L   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV  A
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSA 130          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 57/134 (42.54%), Postives = 70/134 (52.24%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            F+L   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV  A
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSA 130          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 57/132 (43.18%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  264 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKA 659
            L P PY L+AL P +SK+TLEFH+GKHH+ YV NLN  I GTE  +  SLE++V  S         FNNAAQ WNH F+W                  I+  +GS               FGSGW WLV KA
Sbjct:    5 LPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEF-ENLSLEEIVKKSSG-----GVFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKA 130          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of FC930245 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  258 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 650
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
The following BLAST results are available for this feature:
BLAST of FC930245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SODF_PSEPK1.545e-2243.28Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_PHOLE2.018e-2241.04Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_SYNE75.871e-2241.22Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_SALTY7.668e-2242.54Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI7.668e-2242.54Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_BORPE1.308e-2143.18Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_SHIFL2.914e-2140.46Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI2.914e-2140.46Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL62.914e-2140.46Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO572.914e-2140.46Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC34005D01EF PostHarvC1 Citrus clementina cDNA clone C34005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930245 ID=FC930245; Name=FC930245; organism=Citrus clementina; type=EST; length=680bp
GGCACTCACTTCGTAGTACCCCACACAAATCAAGAGTCAACCCAGTTCAC
ACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAA
TATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAA
TTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTT
CATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTC
TGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGC
CACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGA
GCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGA
TGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACT
TGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTC
TGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCT
AGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAAT
TCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTA
TACAAAGCAATAATAGAGCTGATGTGGCTA
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